Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30908 | 3' | -60.7 | NC_006552.1 | + | 33481 | 0.66 | 0.468525 |
Target: 5'- aUGGugauaACCAGGuUGGCGUccuugGGCAGCGcgaacAGCg -3' miRNA: 3'- -ACC-----UGGUCC-GCCGCG-----UCGUCGU-----UCGg -5' |
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30908 | 3' | -60.7 | NC_006552.1 | + | 25293 | 0.7 | 0.244693 |
Target: 5'- aUGGACCGGGUagcggugucggucGGCGUccaagcugGGCGGguAGCg -3' miRNA: 3'- -ACCUGGUCCG-------------CCGCG--------UCGUCguUCGg -5' |
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30908 | 3' | -60.7 | NC_006552.1 | + | 15019 | 0.7 | 0.245306 |
Target: 5'- cGGcGCCAGuggcuucagcacGCGGgGCugcGCAGCAGGCUg -3' miRNA: 3'- aCC-UGGUC------------CGCCgCGu--CGUCGUUCGG- -5' |
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30908 | 3' | -60.7 | NC_006552.1 | + | 30653 | 0.7 | 0.245306 |
Target: 5'- uUGGAagucggccacCCAGGCGGUGUAGaugucgucgAGCGAuGCCg -3' miRNA: 3'- -ACCU----------GGUCCGCCGCGUCg--------UCGUU-CGG- -5' |
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30908 | 3' | -60.7 | NC_006552.1 | + | 41403 | 0.7 | 0.251508 |
Target: 5'- gGGucaGCCAGGCaGCGCGcCAGUucGGCCg -3' miRNA: 3'- aCC---UGGUCCGcCGCGUcGUCGu-UCGG- -5' |
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30908 | 3' | -60.7 | NC_006552.1 | + | 8137 | 0.7 | 0.257838 |
Target: 5'- cUGcGCCAGGUGGuCGC-GCAGUAucgcGGCCc -3' miRNA: 3'- -ACcUGGUCCGCC-GCGuCGUCGU----UCGG- -5' |
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30908 | 3' | -60.7 | NC_006552.1 | + | 8419 | 0.7 | 0.263647 |
Target: 5'- gGGGCuCAGGCcgcgccaGGCGC-GCAGCAGuCCc -3' miRNA: 3'- aCCUG-GUCCG-------CCGCGuCGUCGUUcGG- -5' |
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30908 | 3' | -60.7 | NC_006552.1 | + | 53993 | 0.7 | 0.264298 |
Target: 5'- -aGGCCAGGC-GCGUggcccuggcccuGGCcGCGAGCCg -3' miRNA: 3'- acCUGGUCCGcCGCG------------UCGuCGUUCGG- -5' |
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30908 | 3' | -60.7 | NC_006552.1 | + | 61126 | 0.69 | 0.284466 |
Target: 5'- aGGACaucagcgaagagCAGGCGuuggcagagggaGUGC-GCGGCGAGCCa -3' miRNA: 3'- aCCUG------------GUCCGC------------CGCGuCGUCGUUCGG- -5' |
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30908 | 3' | -60.7 | NC_006552.1 | + | 61966 | 0.71 | 0.233284 |
Target: 5'- -uGACCAGauccaaugcgccGCuGUGCAGCAGCGAGgCCg -3' miRNA: 3'- acCUGGUC------------CGcCGCGUCGUCGUUC-GG- -5' |
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30908 | 3' | -60.7 | NC_006552.1 | + | 40359 | 0.71 | 0.227461 |
Target: 5'- gUGGaACCAGaUGGCGCAGCcaucGCugcGGCCg -3' miRNA: 3'- -ACC-UGGUCcGCCGCGUCGu---CGu--UCGG- -5' |
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30908 | 3' | -60.7 | NC_006552.1 | + | 63680 | 0.71 | 0.227461 |
Target: 5'- aGGACCAGGCGcCGac---GCAAGCCg -3' miRNA: 3'- aCCUGGUCCGCcGCgucguCGUUCGG- -5' |
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30908 | 3' | -60.7 | NC_006552.1 | + | 64733 | 0.77 | 0.084782 |
Target: 5'- -cGACguGGCGGCGCuGCAGguGGCg -3' miRNA: 3'- acCUGguCCGCCGCGuCGUCguUCGg -5' |
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30908 | 3' | -60.7 | NC_006552.1 | + | 11042 | 0.76 | 0.097299 |
Target: 5'- aUGGcaACCAGGCGGcCGCcgGGCuucAGCAGGCUg -3' miRNA: 3'- -ACC--UGGUCCGCC-GCG--UCG---UCGUUCGG- -5' |
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30908 | 3' | -60.7 | NC_006552.1 | + | 27363 | 0.75 | 0.117779 |
Target: 5'- cGGGCCAGGa-GCcgGCAGacCAGCAGGCCg -3' miRNA: 3'- aCCUGGUCCgcCG--CGUC--GUCGUUCGG- -5' |
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30908 | 3' | -60.7 | NC_006552.1 | + | 33535 | 0.74 | 0.131222 |
Target: 5'- cUGGuGCgCAGGC-GCGCAGCggccgacagcAGCAGGCCa -3' miRNA: 3'- -ACC-UG-GUCCGcCGCGUCG----------UCGUUCGG- -5' |
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30908 | 3' | -60.7 | NC_006552.1 | + | 28608 | 0.74 | 0.14184 |
Target: 5'- aGGAUC-GGCGGCGguucgaugccuucCAGCGGCAGGUa -3' miRNA: 3'- aCCUGGuCCGCCGC-------------GUCGUCGUUCGg -5' |
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30908 | 3' | -60.7 | NC_006552.1 | + | 59287 | 0.73 | 0.150013 |
Target: 5'- -cGACC--GCGGCGCuGaCGGCAAGCCg -3' miRNA: 3'- acCUGGucCGCCGCGuC-GUCGUUCGG- -5' |
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30908 | 3' | -60.7 | NC_006552.1 | + | 39273 | 0.73 | 0.162432 |
Target: 5'- aGGugacaGCCAGcGCugccGGCGCaggaAGCGGCAGGCCu -3' miRNA: 3'- aCC-----UGGUC-CG----CCGCG----UCGUCGUUCGG- -5' |
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30908 | 3' | -60.7 | NC_006552.1 | + | 56852 | 0.72 | 0.17577 |
Target: 5'- gGGAUUcGGCaGCGCcGCGGCGAGCg -3' miRNA: 3'- aCCUGGuCCGcCGCGuCGUCGUUCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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