miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30910 5' -59.3 NC_006552.1 + 52104 0.66 0.522482
Target:  5'- aGCCAGCCaGCAAGGCagcaGAgcCCaGCGCUAc -3'
miRNA:   3'- -UGGUUGG-CGUUCCG----CU--GGcCGUGGUa -5'
30910 5' -59.3 NC_006552.1 + 62954 0.66 0.522482
Target:  5'- cGCUGACgCGCAcGaacUGGCCGGCGCCGUu -3'
miRNA:   3'- -UGGUUG-GCGUuCc--GCUGGCCGUGGUA- -5'
30910 5' -59.3 NC_006552.1 + 24930 0.66 0.521453
Target:  5'- uGCCGACCGCuGGGCaGAUCccaacgcgcuucaGGCugGCCAg -3'
miRNA:   3'- -UGGUUGGCGuUCCG-CUGG-------------CCG--UGGUa -5'
30910 5' -59.3 NC_006552.1 + 50270 0.66 0.520424
Target:  5'- gGCCu-CCGCAugaagccaaauGCGACUGGCGCCc- -3'
miRNA:   3'- -UGGuuGGCGUuc---------CGCUGGCCGUGGua -5'
30910 5' -59.3 NC_006552.1 + 55977 0.66 0.516317
Target:  5'- cACCGGCCGCGccgaAGGCcugucgaucagcuucGAggcacaccuccUCGGCACCAa -3'
miRNA:   3'- -UGGUUGGCGU----UCCG---------------CU-----------GGCCGUGGUa -5'
30910 5' -59.3 NC_006552.1 + 61939 0.66 0.512223
Target:  5'- cCCAACUGCGGGGCaagGAau-GCACCAUg -3'
miRNA:   3'- uGGUUGGCGUUCCG---CUggcCGUGGUA- -5'
30910 5' -59.3 NC_006552.1 + 48312 0.66 0.502047
Target:  5'- cGCCAACC-CGGcGGCGACCGuuGCUg- -3'
miRNA:   3'- -UGGUUGGcGUU-CCGCUGGCcgUGGua -5'
30910 5' -59.3 NC_006552.1 + 50504 0.66 0.502047
Target:  5'- aACCAGCCac--GGCG-CCGGCAgCCGUc -3'
miRNA:   3'- -UGGUUGGcguuCCGCuGGCCGU-GGUA- -5'
30910 5' -59.3 NC_006552.1 + 62436 0.66 0.502047
Target:  5'- cCCGAcgugcCCGCc-GGCGuuCCGGCGCCGc -3'
miRNA:   3'- uGGUU-----GGCGuuCCGCu-GGCCGUGGUa -5'
30910 5' -59.3 NC_006552.1 + 63831 0.66 0.501035
Target:  5'- aGCCAGCCGCc-GGCGgaggaucACUGGCuucguCCGUu -3'
miRNA:   3'- -UGGUUGGCGuuCCGC-------UGGCCGu----GGUA- -5'
30910 5' -59.3 NC_006552.1 + 26474 0.66 0.492966
Target:  5'- cGCCAcaGCCGCGccguAGGUGccuugacucaacgauCCGGCGCCu- -3'
miRNA:   3'- -UGGU--UGGCGU----UCCGCu--------------GGCCGUGGua -5'
30910 5' -59.3 NC_006552.1 + 53154 0.66 0.491961
Target:  5'- cAUCGAUCGCuuuGAGGCGAUCGuGCGacCCAa -3'
miRNA:   3'- -UGGUUGGCG---UUCCGCUGGC-CGU--GGUa -5'
30910 5' -59.3 NC_006552.1 + 62154 0.66 0.491961
Target:  5'- gACCAgauccuGCCGCAGuacuGGCaaGACCGGUACgGg -3'
miRNA:   3'- -UGGU------UGGCGUU----CCG--CUGGCCGUGgUa -5'
30910 5' -59.3 NC_006552.1 + 60391 0.66 0.491961
Target:  5'- gGCCAACuCGCAgaaacgGGGCuacugcacGCCGGCACUc- -3'
miRNA:   3'- -UGGUUG-GCGU------UCCGc-------UGGCCGUGGua -5'
30910 5' -59.3 NC_006552.1 + 65065 0.66 0.48197
Target:  5'- gACCAguACUGCAAcggaaccuGGaCGccGCCGGCGCCGg -3'
miRNA:   3'- -UGGU--UGGCGUU--------CC-GC--UGGCCGUGGUa -5'
30910 5' -59.3 NC_006552.1 + 3546 0.67 0.476022
Target:  5'- cGCCAgaAUCGCAauucgugaucacgccAGGUGcuggccgagccGCCGGCGCCGg -3'
miRNA:   3'- -UGGU--UGGCGU---------------UCCGC-----------UGGCCGUGGUa -5'
30910 5' -59.3 NC_006552.1 + 58418 0.67 0.459373
Target:  5'- -gCAACCGCGAGuGCcaGGCCucgaucagccgcuuGGCACCGUc -3'
miRNA:   3'- ugGUUGGCGUUC-CG--CUGG--------------CCGUGGUA- -5'
30910 5' -59.3 NC_006552.1 + 59684 0.67 0.44304
Target:  5'- gGCCAACgGC--GGUGAUCGGCAauCCGc -3'
miRNA:   3'- -UGGUUGgCGuuCCGCUGGCCGU--GGUa -5'
30910 5' -59.3 NC_006552.1 + 22354 0.67 0.433585
Target:  5'- cACCGccGCCGUAucGGUGugCaGCACCAg -3'
miRNA:   3'- -UGGU--UGGCGUu-CCGCugGcCGUGGUa -5'
30910 5' -59.3 NC_006552.1 + 32076 0.68 0.39698
Target:  5'- uGCCAGCC-CGGucGGgGGuuGGCACCAg -3'
miRNA:   3'- -UGGUUGGcGUU--CCgCUggCCGUGGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.