miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30910 5' -59.3 NC_006552.1 + 65065 0.66 0.48197
Target:  5'- gACCAguACUGCAAcggaaccuGGaCGccGCCGGCGCCGg -3'
miRNA:   3'- -UGGU--UGGCGUU--------CC-GC--UGGCCGUGGUa -5'
30910 5' -59.3 NC_006552.1 + 63989 0.7 0.314626
Target:  5'- uACCuGGCCGCcaAGGGCcuGGCCGGCACa-- -3'
miRNA:   3'- -UGG-UUGGCG--UUCCG--CUGGCCGUGgua -5'
30910 5' -59.3 NC_006552.1 + 63831 0.66 0.501035
Target:  5'- aGCCAGCCGCc-GGCGgaggaucACUGGCuucguCCGUu -3'
miRNA:   3'- -UGGUUGGCGuuCCGC-------UGGCCGu----GGUA- -5'
30910 5' -59.3 NC_006552.1 + 63485 0.7 0.299789
Target:  5'- uGCCGGCCGCc-GGCG-CCGGagcaACCGg -3'
miRNA:   3'- -UGGUUGGCGuuCCGCuGGCCg---UGGUa -5'
30910 5' -59.3 NC_006552.1 + 62954 0.66 0.522482
Target:  5'- cGCUGACgCGCAcGaacUGGCCGGCGCCGUu -3'
miRNA:   3'- -UGGUUG-GCGUuCc--GCUGGCCGUGGUA- -5'
30910 5' -59.3 NC_006552.1 + 62436 0.66 0.502047
Target:  5'- cCCGAcgugcCCGCc-GGCGuuCCGGCGCCGc -3'
miRNA:   3'- uGGUU-----GGCGuuCCGCu-GGCCGUGGUa -5'
30910 5' -59.3 NC_006552.1 + 62154 0.66 0.491961
Target:  5'- gACCAgauccuGCCGCAGuacuGGCaaGACCGGUACgGg -3'
miRNA:   3'- -UGGU------UGGCGUU----CCG--CUGGCCGUGgUa -5'
30910 5' -59.3 NC_006552.1 + 61939 0.66 0.512223
Target:  5'- cCCAACUGCGGGGCaagGAau-GCACCAUg -3'
miRNA:   3'- uGGUUGGCGUUCCG---CUggcCGUGGUA- -5'
30910 5' -59.3 NC_006552.1 + 61035 0.69 0.354117
Target:  5'- gAUCAGgCGCGcuGGCGGCCGaGCAuCCAUa -3'
miRNA:   3'- -UGGUUgGCGUu-CCGCUGGC-CGU-GGUA- -5'
30910 5' -59.3 NC_006552.1 + 60391 0.66 0.491961
Target:  5'- gGCCAACuCGCAgaaacgGGGCuacugcacGCCGGCACUc- -3'
miRNA:   3'- -UGGUUG-GCGU------UCCGc-------UGGCCGUGGua -5'
30910 5' -59.3 NC_006552.1 + 59684 0.67 0.44304
Target:  5'- gGCCAACgGC--GGUGAUCGGCAauCCGc -3'
miRNA:   3'- -UGGUUGgCGuuCCGCUGGCCGU--GGUa -5'
30910 5' -59.3 NC_006552.1 + 58418 0.67 0.459373
Target:  5'- -gCAACCGCGAGuGCcaGGCCucgaucagccgcuuGGCACCGUc -3'
miRNA:   3'- ugGUUGGCGUUC-CG--CUGG--------------CCGUGGUA- -5'
30910 5' -59.3 NC_006552.1 + 58276 0.71 0.245859
Target:  5'- uGCCAAUCGCGaacuggucGGGCGaACUGGC-CCAg -3'
miRNA:   3'- -UGGUUGGCGU--------UCCGC-UGGCCGuGGUa -5'
30910 5' -59.3 NC_006552.1 + 55977 0.66 0.516317
Target:  5'- cACCGGCCGCGccgaAGGCcugucgaucagcuucGAggcacaccuccUCGGCACCAa -3'
miRNA:   3'- -UGGUUGGCGU----UCCG---------------CU-----------GGCCGUGGUa -5'
30910 5' -59.3 NC_006552.1 + 54051 0.72 0.222047
Target:  5'- cACCAGCCGCAAccGGCGACCG--ACUAc -3'
miRNA:   3'- -UGGUUGGCGUU--CCGCUGGCcgUGGUa -5'
30910 5' -59.3 NC_006552.1 + 53773 0.7 0.299789
Target:  5'- gGCCAGCaGCAGGaGCGcACCgaguGGCACCGg -3'
miRNA:   3'- -UGGUUGgCGUUC-CGC-UGG----CCGUGGUa -5'
30910 5' -59.3 NC_006552.1 + 53154 0.66 0.491961
Target:  5'- cAUCGAUCGCuuuGAGGCGAUCGuGCGacCCAa -3'
miRNA:   3'- -UGGUUGGCG---UUCCGCUGGC-CGU--GGUa -5'
30910 5' -59.3 NC_006552.1 + 52104 0.66 0.522482
Target:  5'- aGCCAGCCaGCAAGGCagcaGAgcCCaGCGCUAc -3'
miRNA:   3'- -UGGUUGG-CGUUCCG----CU--GGcCGUGGUa -5'
30910 5' -59.3 NC_006552.1 + 50504 0.66 0.502047
Target:  5'- aACCAGCCac--GGCG-CCGGCAgCCGUc -3'
miRNA:   3'- -UGGUUGGcguuCCGCuGGCCGU-GGUA- -5'
30910 5' -59.3 NC_006552.1 + 50270 0.66 0.520424
Target:  5'- gGCCu-CCGCAugaagccaaauGCGACUGGCGCCc- -3'
miRNA:   3'- -UGGuuGGCGUuc---------CGCUGGCCGUGGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.