miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30924 3' -56.2 NC_006552.1 + 32696 0.66 0.715728
Target:  5'- uGUCGUCGccGGCCGGCGcgggGCCgGUGGa -3'
miRNA:   3'- cUAGUAGU--CCGGUCGUag--CGG-CACCg -5'
30924 3' -56.2 NC_006552.1 + 26706 0.66 0.705091
Target:  5'- uGGUCGcccaGGGCgccgaaGGCGUCGCCGUgcagugGGCu -3'
miRNA:   3'- -CUAGUag--UCCGg-----UCGUAGCGGCA------CCG- -5'
30924 3' -56.2 NC_006552.1 + 6530 0.66 0.673889
Target:  5'- --cCAUCGGGCCAGCuauuuccaggacgucUCGCguaUGGCu -3'
miRNA:   3'- cuaGUAGUCCGGUCGu--------------AGCGgc-ACCG- -5'
30924 3' -56.2 NC_006552.1 + 47673 0.66 0.661954
Target:  5'- gGAUC-UCAGGUCccccgagaaAGCAuUCGCCcagccggagGUGGCg -3'
miRNA:   3'- -CUAGuAGUCCGG---------UCGU-AGCGG---------CACCG- -5'
30924 3' -56.2 NC_006552.1 + 24720 0.66 0.661954
Target:  5'- gGGUCGU-AGGCCAcCAgccggCGCCG-GGCc -3'
miRNA:   3'- -CUAGUAgUCCGGUcGUa----GCGGCaCCG- -5'
30924 3' -56.2 NC_006552.1 + 53987 0.67 0.651076
Target:  5'- --gCAggCAGGCCAggcGCGUgGCCcUGGCc -3'
miRNA:   3'- cuaGUa-GUCCGGU---CGUAgCGGcACCG- -5'
30924 3' -56.2 NC_006552.1 + 34926 0.67 0.651076
Target:  5'- aAUC-UCAGGCCAGUGcccUUGCCcucGGCg -3'
miRNA:   3'- cUAGuAGUCCGGUCGU---AGCGGca-CCG- -5'
30924 3' -56.2 NC_006552.1 + 26341 0.67 0.628187
Target:  5'- --gCGUCAGGUagaGGCGcgCGCCGgucacacUGGCa -3'
miRNA:   3'- cuaGUAGUCCGg--UCGUa-GCGGC-------ACCG- -5'
30924 3' -56.2 NC_006552.1 + 36342 0.67 0.618377
Target:  5'- --cUAUCccGCCAcaUAUCGCCGUGGCc -3'
miRNA:   3'- cuaGUAGucCGGUc-GUAGCGGCACCG- -5'
30924 3' -56.2 NC_006552.1 + 51521 0.67 0.607488
Target:  5'- cAUCGaggCAGGCCAGauCAUCgacGCCGaGGCg -3'
miRNA:   3'- cUAGUa--GUCCGGUC--GUAG---CGGCaCCG- -5'
30924 3' -56.2 NC_006552.1 + 45345 0.67 0.59662
Target:  5'- gGGUCuuUCGGGCCuGGCAugUCGgCCGguaucUGGCa -3'
miRNA:   3'- -CUAGu-AGUCCGG-UCGU--AGC-GGC-----ACCG- -5'
30924 3' -56.2 NC_006552.1 + 35869 0.68 0.585782
Target:  5'- --aCGUCGGgGCCucGCc-UGCCGUGGCg -3'
miRNA:   3'- cuaGUAGUC-CGGu-CGuaGCGGCACCG- -5'
30924 3' -56.2 NC_006552.1 + 63816 0.68 0.574982
Target:  5'- -uUCGgcgccCAGGCCAGCca-GCCGccGGCg -3'
miRNA:   3'- cuAGUa----GUCCGGUCGuagCGGCa-CCG- -5'
30924 3' -56.2 NC_006552.1 + 55676 0.68 0.574982
Target:  5'- -uUCAUCGGcuGCCAGgAaggggucgaUCGCCG-GGCg -3'
miRNA:   3'- cuAGUAGUC--CGGUCgU---------AGCGGCaCCG- -5'
30924 3' -56.2 NC_006552.1 + 39768 0.68 0.553528
Target:  5'- -uUCGUCcacGGUCAGCggcguGUCGCCcgcagGUGGCa -3'
miRNA:   3'- cuAGUAGu--CCGGUCG-----UAGCGG-----CACCG- -5'
30924 3' -56.2 NC_006552.1 + 44364 0.69 0.532318
Target:  5'- -uUCGUCAGuGCCAGCA--GCCGgucggagGGUc -3'
miRNA:   3'- cuAGUAGUC-CGGUCGUagCGGCa------CCG- -5'
30924 3' -56.2 NC_006552.1 + 41565 0.69 0.511407
Target:  5'- gGGUCAUCGGGUaccggcuugaaGGCAUUGCCacUGGUa -3'
miRNA:   3'- -CUAGUAGUCCGg----------UCGUAGCGGc-ACCG- -5'
30924 3' -56.2 NC_006552.1 + 6836 0.69 0.511407
Target:  5'- cGAUCAUCAGGgCAGCAgccuucCGaCCGUccuuGCg -3'
miRNA:   3'- -CUAGUAGUCCgGUCGUa-----GC-GGCAc---CG- -5'
30924 3' -56.2 NC_006552.1 + 23989 0.69 0.511407
Target:  5'- --gCAUCAGGCCGGUGUCGUCa---- -3'
miRNA:   3'- cuaGUAGUCCGGUCGUAGCGGcaccg -5'
30924 3' -56.2 NC_006552.1 + 5425 0.69 0.480709
Target:  5'- --cCAUCAGGCUGcGCGccaguuguUCGCCGcgcUGGCg -3'
miRNA:   3'- cuaGUAGUCCGGU-CGU--------AGCGGC---ACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.