Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30924 | 3' | -56.2 | NC_006552.1 | + | 18049 | 0.7 | 0.474676 |
Target: 5'- cAUCAggcguUCGGGCCAGCAgguucuccacugcgCGCUGguuuugGGCa -3' miRNA: 3'- cUAGU-----AGUCCGGUCGUa-------------GCGGCa-----CCG- -5' |
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30924 | 3' | -56.2 | NC_006552.1 | + | 31273 | 0.7 | 0.46075 |
Target: 5'- uGAUCggCAGGCCGGUA--GCCGUGuCg -3' miRNA: 3'- -CUAGuaGUCCGGUCGUagCGGCACcG- -5' |
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30924 | 3' | -56.2 | NC_006552.1 | + | 60537 | 0.7 | 0.454848 |
Target: 5'- --cCGUCucGGCCAGCAccguucgccggcgacUCGCCGcaGGCa -3' miRNA: 3'- cuaGUAGu-CCGGUCGU---------------AGCGGCa-CCG- -5' |
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30924 | 3' | -56.2 | NC_006552.1 | + | 36164 | 0.71 | 0.394598 |
Target: 5'- --gCAUCGGcgcuggccucGCCAGCAUCGCCGgcacccgcgucGGCu -3' miRNA: 3'- cuaGUAGUC----------CGGUCGUAGCGGCa----------CCG- -5' |
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30924 | 3' | -56.2 | NC_006552.1 | + | 58348 | 0.71 | 0.38566 |
Target: 5'- -cUCGcgGGGgCAGUuUCGCCGUGGCc -3' miRNA: 3'- cuAGUagUCCgGUCGuAGCGGCACCG- -5' |
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30924 | 3' | -56.2 | NC_006552.1 | + | 30796 | 0.72 | 0.343019 |
Target: 5'- -uUCGUCuGGCCAGUAgccuuUCGCC-UGGUg -3' miRNA: 3'- cuAGUAGuCCGGUCGU-----AGCGGcACCG- -5' |
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30924 | 3' | -56.2 | NC_006552.1 | + | 34067 | 0.76 | 0.207233 |
Target: 5'- cGAUCAgCAGuuCCAGCuuGUCGCCGUGGUc -3' miRNA: 3'- -CUAGUaGUCc-GGUCG--UAGCGGCACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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