miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30926 5' -54 NC_006552.1 + 37807 0.66 0.837135
Target:  5'- gCGCGAuc-AUUGGCAucugcgcgaucuGGGCGCcGGCCu -3'
miRNA:   3'- -GCGUUuucUGGCCGU------------UCCGCGaCUGG- -5'
30926 5' -54 NC_006552.1 + 3886 0.66 0.831803
Target:  5'- gGCAAguGAGGCCGuuGCucgauagaaacccuuGAGGUGCugcaUGACCa -3'
miRNA:   3'- gCGUU--UUCUGGC--CG---------------UUCCGCG----ACUGG- -5'
30926 5' -54 NC_006552.1 + 53780 0.66 0.831803
Target:  5'- aGCAGGAGcgcACCgaguGGCAccGGGUcgugcucuuuggccgGCUGGCCg -3'
miRNA:   3'- gCGUUUUC---UGG----CCGU--UCCG---------------CGACUGG- -5'
30926 5' -54 NC_006552.1 + 63895 0.66 0.828206
Target:  5'- aCGCAcccAGGaACUGGCAAugcuGGUucgcauGCUGGCCa -3'
miRNA:   3'- -GCGUu--UUC-UGGCCGUU----CCG------CGACUGG- -5'
30926 5' -54 NC_006552.1 + 43723 0.66 0.828206
Target:  5'- aCGCcAAcGAcuCCGGCAcgAGGCGC-GACa -3'
miRNA:   3'- -GCGuUUuCU--GGCCGU--UCCGCGaCUGg -5'
30926 5' -54 NC_006552.1 + 58282 0.66 0.819072
Target:  5'- uCGCGA---ACUGGUcGGGCGaaCUGGCCc -3'
miRNA:   3'- -GCGUUuucUGGCCGuUCCGC--GACUGG- -5'
30926 5' -54 NC_006552.1 + 47638 0.66 0.819072
Target:  5'- aGCGAGAG-UCGGCAGcaaaGCG-UGGCCg -3'
miRNA:   3'- gCGUUUUCuGGCCGUUc---CGCgACUGG- -5'
30926 5' -54 NC_006552.1 + 27060 0.66 0.800226
Target:  5'- gGCAuuuGGAcCCGGUggGGUGaaGACg -3'
miRNA:   3'- gCGUuu-UCU-GGCCGuuCCGCgaCUGg -5'
30926 5' -54 NC_006552.1 + 32068 0.67 0.780681
Target:  5'- gCGCAGAaugccAGcCCGGUcGGGgGUUGGCa -3'
miRNA:   3'- -GCGUUU-----UCuGGCCGuUCCgCGACUGg -5'
30926 5' -54 NC_006552.1 + 26529 0.67 0.780681
Target:  5'- aGCGGcGGcGCCGGgGuguccagcgucAGGCGCUcGGCCu -3'
miRNA:   3'- gCGUUuUC-UGGCCgU-----------UCCGCGA-CUGG- -5'
30926 5' -54 NC_006552.1 + 5039 0.67 0.770672
Target:  5'- gGUAcAGGugCcgauaGGUAAGcGUGCUGGCCa -3'
miRNA:   3'- gCGUuUUCugG-----CCGUUC-CGCGACUGG- -5'
30926 5' -54 NC_006552.1 + 2054 0.67 0.770672
Target:  5'- gCGCuuGAGcgcGCCGGCGucgugcgcGGCcuGCUGAUCg -3'
miRNA:   3'- -GCGuuUUC---UGGCCGUu-------CCG--CGACUGG- -5'
30926 5' -54 NC_006552.1 + 34616 0.67 0.760522
Target:  5'- gCGCAAcgccAGugaUGGCAucGGCGCUGGCa -3'
miRNA:   3'- -GCGUUu---UCug-GCCGUu-CCGCGACUGg -5'
30926 5' -54 NC_006552.1 + 13822 0.67 0.760522
Target:  5'- cCGCuguAGGuGCCGGCGcgcacguucaucAGGCGCcgguacugGGCCa -3'
miRNA:   3'- -GCGuu-UUC-UGGCCGU------------UCCGCGa-------CUGG- -5'
30926 5' -54 NC_006552.1 + 58480 0.67 0.757451
Target:  5'- aCGCAcuGucGAgcgcugugcuucucCCGGCAacacaucaAGGCGCaGACCg -3'
miRNA:   3'- -GCGU--UuuCU--------------GGCCGU--------UCCGCGaCUGG- -5'
30926 5' -54 NC_006552.1 + 26425 0.67 0.75024
Target:  5'- cCGCGAAGgcGAUCaGCGAcGGCGCcGACUc -3'
miRNA:   3'- -GCGUUUU--CUGGcCGUU-CCGCGaCUGG- -5'
30926 5' -54 NC_006552.1 + 59378 0.68 0.733546
Target:  5'- gCGCGAgccaacgauccauggAGGGCgCGGCAgcgucAGGCGgUGGCg -3'
miRNA:   3'- -GCGUU---------------UUCUG-GCCGU-----UCCGCgACUGg -5'
30926 5' -54 NC_006552.1 + 34959 0.68 0.72933
Target:  5'- uCGCuacccauGAUCGGgAAGGCGUUcGCCg -3'
miRNA:   3'- -GCGuuuu---CUGGCCgUUCCGCGAcUGG- -5'
30926 5' -54 NC_006552.1 + 48829 0.68 0.72933
Target:  5'- aGCcAAAGuuuccgccuCCGGCAuGGCGgUGAUCu -3'
miRNA:   3'- gCGuUUUCu--------GGCCGUuCCGCgACUGG- -5'
30926 5' -54 NC_006552.1 + 2658 0.68 0.72933
Target:  5'- gGCuAGGGACCGcGC--GGCGCcGAUCa -3'
miRNA:   3'- gCGuUUUCUGGC-CGuuCCGCGaCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.