miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30926 5' -54 NC_006552.1 + 62166 0.81 0.144848
Target:  5'- cCGCAGuacuggcAAGACCGGUAcgGGGCGCcagGGCCa -3'
miRNA:   3'- -GCGUU-------UUCUGGCCGU--UCCGCGa--CUGG- -5'
30926 5' -54 NC_006552.1 + 59624 0.8 0.171161
Target:  5'- gGCAGAacucGGGCCGG-GAGGUGCUGGCUg -3'
miRNA:   3'- gCGUUU----UCUGGCCgUUCCGCGACUGG- -5'
30926 5' -54 NC_006552.1 + 36151 0.76 0.303743
Target:  5'- uGCcu--GAUCGGCGGcaucGGCGCUGGCCu -3'
miRNA:   3'- gCGuuuuCUGGCCGUU----CCGCGACUGG- -5'
30926 5' -54 NC_006552.1 + 100 0.74 0.368523
Target:  5'- cCGCGucuuguuGGGAUCGGCAuGGGaaaGCUGGCCc -3'
miRNA:   3'- -GCGUu------UUCUGGCCGU-UCCg--CGACUGG- -5'
30926 5' -54 NC_006552.1 + 46001 0.74 0.377258
Target:  5'- gCGCAccuuuuGGGCCGGgAAGGCGCgcACCu -3'
miRNA:   3'- -GCGUuu----UCUGGCCgUUCCGCGacUGG- -5'
30926 5' -54 NC_006552.1 + 2127 0.74 0.395142
Target:  5'- aGCAGAucccugauGACUucaGGCcguGGCGCUGGCCa -3'
miRNA:   3'- gCGUUUu-------CUGG---CCGuu-CCGCGACUGG- -5'
30926 5' -54 NC_006552.1 + 25056 0.73 0.404287
Target:  5'- cCGCGAAAcGACCGuaGGGGCGC-GGCg -3'
miRNA:   3'- -GCGUUUU-CUGGCcgUUCCGCGaCUGg -5'
30926 5' -54 NC_006552.1 + 44897 0.72 0.451946
Target:  5'- gGCAGc-GGCCGGCgGAGuuGCUGACCc -3'
miRNA:   3'- gCGUUuuCUGGCCG-UUCcgCGACUGG- -5'
30926 5' -54 NC_006552.1 + 33404 0.72 0.481971
Target:  5'- gCGCuu-AGACUGcGcCGAGGCGCUcGCCg -3'
miRNA:   3'- -GCGuuuUCUGGC-C-GUUCCGCGAcUGG- -5'
30926 5' -54 NC_006552.1 + 19705 0.72 0.491166
Target:  5'- gGCAAagcGAGAuugcauuucggcgUCGGCcacguuGGCGCUGGCCg -3'
miRNA:   3'- gCGUU---UUCU-------------GGCCGuu----CCGCGACUGG- -5'
30926 5' -54 NC_006552.1 + 53976 0.71 0.543604
Target:  5'- gGCAAGccugagcAGGCaGGCcAGGCGCgUGGCCc -3'
miRNA:   3'- gCGUUU-------UCUGgCCGuUCCGCG-ACUGG- -5'
30926 5' -54 NC_006552.1 + 58170 0.71 0.544673
Target:  5'- aGCAAGAGuaucuUCGGCcgcaagAAGGCcCUGGCCg -3'
miRNA:   3'- gCGUUUUCu----GGCCG------UUCCGcGACUGG- -5'
30926 5' -54 NC_006552.1 + 15038 0.7 0.566186
Target:  5'- aCGCG--GGGCUGcGCAgcAGGCuGUUGGCCg -3'
miRNA:   3'- -GCGUuuUCUGGC-CGU--UCCG-CGACUGG- -5'
30926 5' -54 NC_006552.1 + 57147 0.7 0.566186
Target:  5'- aGCAccGGGACCuGGCGgcguuccucaAGGgGUUGACCg -3'
miRNA:   3'- gCGUu-UUCUGG-CCGU----------UCCgCGACUGG- -5'
30926 5' -54 NC_006552.1 + 55055 0.7 0.575941
Target:  5'- aGCAcuGGG-CGGCGaagaaguucccguAGGCGuCUGACCa -3'
miRNA:   3'- gCGUuuUCUgGCCGU-------------UCCGC-GACUGG- -5'
30926 5' -54 NC_006552.1 + 16539 0.7 0.577027
Target:  5'- uCGCGGAAugcucuucGCCGGCAuGGacgccaguuCGCUGACCa -3'
miRNA:   3'- -GCGUUUUc-------UGGCCGUuCC---------GCGACUGG- -5'
30926 5' -54 NC_006552.1 + 20371 0.7 0.577027
Target:  5'- gCGUGGAAG-CgGGCGaccucgaacAGGCGCUGcGCCa -3'
miRNA:   3'- -GCGUUUUCuGgCCGU---------UCCGCGAC-UGG- -5'
30926 5' -54 NC_006552.1 + 59807 0.7 0.598836
Target:  5'- uGCAGAccGCCaGCAAGGUGaugGACCu -3'
miRNA:   3'- gCGUUUucUGGcCGUUCCGCga-CUGG- -5'
30926 5' -54 NC_006552.1 + 12930 0.7 0.598836
Target:  5'- uCGCcacAAGcUCGGCcAGcGCGCUGGCCu -3'
miRNA:   3'- -GCGuu-UUCuGGCCGuUC-CGCGACUGG- -5'
30926 5' -54 NC_006552.1 + 34348 0.7 0.598836
Target:  5'- aCGCGGAAGAUCGGguGcugcuuGGCGUUcGACg -3'
miRNA:   3'- -GCGUUUUCUGGCCguU------CCGCGA-CUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.