Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30926 | 5' | -54 | NC_006552.1 | + | 41431 | 0.7 | 0.609786 |
Target: 5'- cCGCGuccguGGGGAgCGGCAucaguGGCucuugguaGCUGACCg -3' miRNA: 3'- -GCGU-----UUUCUgGCCGUu----CCG--------CGACUGG- -5' |
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30926 | 5' | -54 | NC_006552.1 | + | 60878 | 0.7 | 0.609786 |
Target: 5'- aGUGAAcauGugCGGCGcaccGGCGCUGGCa -3' miRNA: 3'- gCGUUUu--CugGCCGUu---CCGCGACUGg -5' |
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30926 | 5' | -54 | NC_006552.1 | + | 3554 | 0.7 | 0.620756 |
Target: 5'- uCGCAAuucguGAUCacGCcAGGUGCUGGCCg -3' miRNA: 3'- -GCGUUuu---CUGGc-CGuUCCGCGACUGG- -5' |
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30926 | 5' | -54 | NC_006552.1 | + | 56925 | 0.7 | 0.620756 |
Target: 5'- cCGCGcuGGACUGGCGcaacuaccccgAuGCGUUGGCCu -3' miRNA: 3'- -GCGUuuUCUGGCCGU-----------UcCGCGACUGG- -5' |
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30926 | 5' | -54 | NC_006552.1 | + | 62092 | 0.69 | 0.631737 |
Target: 5'- uGCAugaggauGGCCGGCAGaucGGCGUcgaGGCCa -3' miRNA: 3'- gCGUuuu----CUGGCCGUU---CCGCGa--CUGG- -5' |
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30926 | 5' | -54 | NC_006552.1 | + | 13508 | 0.69 | 0.642717 |
Target: 5'- uGCcGAAGuucaccCCGGCAAGGUGCgcggucuuggUGAUCg -3' miRNA: 3'- gCGuUUUCu-----GGCCGUUCCGCG----------ACUGG- -5' |
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30926 | 5' | -54 | NC_006552.1 | + | 56264 | 0.69 | 0.661357 |
Target: 5'- gGCAGccAAGGCCGGCGuccgccAGuucgccauccagcaGCGCcUGACCg -3' miRNA: 3'- gCGUU--UUCUGGCCGU------UC--------------CGCG-ACUGG- -5' |
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30926 | 5' | -54 | NC_006552.1 | + | 50283 | 0.68 | 0.697268 |
Target: 5'- aGcCAAAugcGACUGGCGcccgccGGGCGCUcACCg -3' miRNA: 3'- gC-GUUUu--CUGGCCGU------UCCGCGAcUGG- -5' |
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30926 | 5' | -54 | NC_006552.1 | + | 45129 | 0.68 | 0.708033 |
Target: 5'- aGCAAcAGGCCgaGGgGAuGGUGCUGAgCa -3' miRNA: 3'- gCGUUuUCUGG--CCgUU-CCGCGACUgG- -5' |
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30926 | 5' | -54 | NC_006552.1 | + | 56716 | 0.68 | 0.708033 |
Target: 5'- uCGCGcgGGACCguGGCGAGGaaCUGcGCCa -3' miRNA: 3'- -GCGUuuUCUGG--CCGUUCCgcGAC-UGG- -5' |
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30926 | 5' | -54 | NC_006552.1 | + | 34439 | 0.68 | 0.718724 |
Target: 5'- uGUAcuGGGCCGGCGagcacagcAGGaCGCgGAUCg -3' miRNA: 3'- gCGUuuUCUGGCCGU--------UCC-GCGaCUGG- -5' |
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30926 | 5' | -54 | NC_006552.1 | + | 15740 | 0.68 | 0.718724 |
Target: 5'- uGCAuguAG-CCGGCAuccGGCGgUGGCg -3' miRNA: 3'- gCGUuu-UCuGGCCGUu--CCGCgACUGg -5' |
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30926 | 5' | -54 | NC_006552.1 | + | 10631 | 0.68 | 0.718724 |
Target: 5'- aGCAGucucACCGGCcacGGCgauGCUGGCCu -3' miRNA: 3'- gCGUUuuc-UGGCCGuu-CCG---CGACUGG- -5' |
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30926 | 5' | -54 | NC_006552.1 | + | 34959 | 0.68 | 0.72933 |
Target: 5'- uCGCuacccauGAUCGGgAAGGCGUUcGCCg -3' miRNA: 3'- -GCGuuuu---CUGGCCgUUCCGCGAcUGG- -5' |
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30926 | 5' | -54 | NC_006552.1 | + | 48829 | 0.68 | 0.72933 |
Target: 5'- aGCcAAAGuuuccgccuCCGGCAuGGCGgUGAUCu -3' miRNA: 3'- gCGuUUUCu--------GGCCGUuCCGCgACUGG- -5' |
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30926 | 5' | -54 | NC_006552.1 | + | 2658 | 0.68 | 0.72933 |
Target: 5'- gGCuAGGGACCGcGC--GGCGCcGAUCa -3' miRNA: 3'- gCGuUUUCUGGC-CGuuCCGCGaCUGG- -5' |
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30926 | 5' | -54 | NC_006552.1 | + | 59378 | 0.68 | 0.733546 |
Target: 5'- gCGCGAgccaacgauccauggAGGGCgCGGCAgcgucAGGCGgUGGCg -3' miRNA: 3'- -GCGUU---------------UUCUG-GCCGU-----UCCGCgACUGg -5' |
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30926 | 5' | -54 | NC_006552.1 | + | 26425 | 0.67 | 0.75024 |
Target: 5'- cCGCGAAGgcGAUCaGCGAcGGCGCcGACUc -3' miRNA: 3'- -GCGUUUU--CUGGcCGUU-CCGCGaCUGG- -5' |
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30926 | 5' | -54 | NC_006552.1 | + | 58480 | 0.67 | 0.757451 |
Target: 5'- aCGCAcuGucGAgcgcugugcuucucCCGGCAacacaucaAGGCGCaGACCg -3' miRNA: 3'- -GCGU--UuuCU--------------GGCCGU--------UCCGCGaCUGG- -5' |
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30926 | 5' | -54 | NC_006552.1 | + | 34616 | 0.67 | 0.760522 |
Target: 5'- gCGCAAcgccAGugaUGGCAucGGCGCUGGCa -3' miRNA: 3'- -GCGUUu---UCug-GCCGUu-CCGCGACUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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