miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30926 5' -54 NC_006552.1 + 32068 0.67 0.780681
Target:  5'- gCGCAGAaugccAGcCCGGUcGGGgGUUGGCa -3'
miRNA:   3'- -GCGUUU-----UCuGGCCGuUCCgCGACUGg -5'
30926 5' -54 NC_006552.1 + 33404 0.72 0.481971
Target:  5'- gCGCuu-AGACUGcGcCGAGGCGCUcGCCg -3'
miRNA:   3'- -GCGuuuUCUGGC-C-GUUCCGCGAcUGG- -5'
30926 5' -54 NC_006552.1 + 34348 0.7 0.598836
Target:  5'- aCGCGGAAGAUCGGguGcugcuuGGCGUUcGACg -3'
miRNA:   3'- -GCGUUUUCUGGCCguU------CCGCGA-CUGg -5'
30926 5' -54 NC_006552.1 + 34439 0.68 0.718724
Target:  5'- uGUAcuGGGCCGGCGagcacagcAGGaCGCgGAUCg -3'
miRNA:   3'- gCGUuuUCUGGCCGU--------UCC-GCGaCUGG- -5'
30926 5' -54 NC_006552.1 + 34616 0.67 0.760522
Target:  5'- gCGCAAcgccAGugaUGGCAucGGCGCUGGCa -3'
miRNA:   3'- -GCGUUu---UCug-GCCGUu-CCGCGACUGg -5'
30926 5' -54 NC_006552.1 + 34959 0.68 0.72933
Target:  5'- uCGCuacccauGAUCGGgAAGGCGUUcGCCg -3'
miRNA:   3'- -GCGuuuu---CUGGCCgUUCCGCGAcUGG- -5'
30926 5' -54 NC_006552.1 + 36151 0.76 0.303743
Target:  5'- uGCcu--GAUCGGCGGcaucGGCGCUGGCCu -3'
miRNA:   3'- gCGuuuuCUGGCCGUU----CCGCGACUGG- -5'
30926 5' -54 NC_006552.1 + 37807 0.66 0.837135
Target:  5'- gCGCGAuc-AUUGGCAucugcgcgaucuGGGCGCcGGCCu -3'
miRNA:   3'- -GCGUUuucUGGCCGU------------UCCGCGaCUGG- -5'
30926 5' -54 NC_006552.1 + 41431 0.7 0.609786
Target:  5'- cCGCGuccguGGGGAgCGGCAucaguGGCucuugguaGCUGACCg -3'
miRNA:   3'- -GCGU-----UUUCUgGCCGUu----CCG--------CGACUGG- -5'
30926 5' -54 NC_006552.1 + 43723 0.66 0.828206
Target:  5'- aCGCcAAcGAcuCCGGCAcgAGGCGC-GACa -3'
miRNA:   3'- -GCGuUUuCU--GGCCGU--UCCGCGaCUGg -5'
30926 5' -54 NC_006552.1 + 44897 0.72 0.451946
Target:  5'- gGCAGc-GGCCGGCgGAGuuGCUGACCc -3'
miRNA:   3'- gCGUUuuCUGGCCG-UUCcgCGACUGG- -5'
30926 5' -54 NC_006552.1 + 45129 0.68 0.708033
Target:  5'- aGCAAcAGGCCgaGGgGAuGGUGCUGAgCa -3'
miRNA:   3'- gCGUUuUCUGG--CCgUU-CCGCGACUgG- -5'
30926 5' -54 NC_006552.1 + 46001 0.74 0.377258
Target:  5'- gCGCAccuuuuGGGCCGGgAAGGCGCgcACCu -3'
miRNA:   3'- -GCGUuu----UCUGGCCgUUCCGCGacUGG- -5'
30926 5' -54 NC_006552.1 + 47638 0.66 0.819072
Target:  5'- aGCGAGAG-UCGGCAGcaaaGCG-UGGCCg -3'
miRNA:   3'- gCGUUUUCuGGCCGUUc---CGCgACUGG- -5'
30926 5' -54 NC_006552.1 + 48829 0.68 0.72933
Target:  5'- aGCcAAAGuuuccgccuCCGGCAuGGCGgUGAUCu -3'
miRNA:   3'- gCGuUUUCu--------GGCCGUuCCGCgACUGG- -5'
30926 5' -54 NC_006552.1 + 50283 0.68 0.697268
Target:  5'- aGcCAAAugcGACUGGCGcccgccGGGCGCUcACCg -3'
miRNA:   3'- gC-GUUUu--CUGGCCGU------UCCGCGAcUGG- -5'
30926 5' -54 NC_006552.1 + 53780 0.66 0.831803
Target:  5'- aGCAGGAGcgcACCgaguGGCAccGGGUcgugcucuuuggccgGCUGGCCg -3'
miRNA:   3'- gCGUUUUC---UGG----CCGU--UCCG---------------CGACUGG- -5'
30926 5' -54 NC_006552.1 + 53976 0.71 0.543604
Target:  5'- gGCAAGccugagcAGGCaGGCcAGGCGCgUGGCCc -3'
miRNA:   3'- gCGUUU-------UCUGgCCGuUCCGCG-ACUGG- -5'
30926 5' -54 NC_006552.1 + 55055 0.7 0.575941
Target:  5'- aGCAcuGGG-CGGCGaagaaguucccguAGGCGuCUGACCa -3'
miRNA:   3'- gCGUuuUCUgGCCGU-------------UCCGC-GACUGG- -5'
30926 5' -54 NC_006552.1 + 56264 0.69 0.661357
Target:  5'- gGCAGccAAGGCCGGCGuccgccAGuucgccauccagcaGCGCcUGACCg -3'
miRNA:   3'- gCGUU--UUCUGGCCGU------UC--------------CGCG-ACUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.