miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30926 5' -54 NC_006552.1 + 100 0.74 0.368523
Target:  5'- cCGCGucuuguuGGGAUCGGCAuGGGaaaGCUGGCCc -3'
miRNA:   3'- -GCGUu------UUCUGGCCGU-UCCg--CGACUGG- -5'
30926 5' -54 NC_006552.1 + 2054 0.67 0.770672
Target:  5'- gCGCuuGAGcgcGCCGGCGucgugcgcGGCcuGCUGAUCg -3'
miRNA:   3'- -GCGuuUUC---UGGCCGUu-------CCG--CGACUGG- -5'
30926 5' -54 NC_006552.1 + 2127 0.74 0.395142
Target:  5'- aGCAGAucccugauGACUucaGGCcguGGCGCUGGCCa -3'
miRNA:   3'- gCGUUUu-------CUGG---CCGuu-CCGCGACUGG- -5'
30926 5' -54 NC_006552.1 + 2658 0.68 0.72933
Target:  5'- gGCuAGGGACCGcGC--GGCGCcGAUCa -3'
miRNA:   3'- gCGuUUUCUGGC-CGuuCCGCGaCUGG- -5'
30926 5' -54 NC_006552.1 + 3554 0.7 0.620756
Target:  5'- uCGCAAuucguGAUCacGCcAGGUGCUGGCCg -3'
miRNA:   3'- -GCGUUuu---CUGGc-CGuUCCGCGACUGG- -5'
30926 5' -54 NC_006552.1 + 3886 0.66 0.831803
Target:  5'- gGCAAguGAGGCCGuuGCucgauagaaacccuuGAGGUGCugcaUGACCa -3'
miRNA:   3'- gCGUU--UUCUGGC--CG---------------UUCCGCG----ACUGG- -5'
30926 5' -54 NC_006552.1 + 5039 0.67 0.770672
Target:  5'- gGUAcAGGugCcgauaGGUAAGcGUGCUGGCCa -3'
miRNA:   3'- gCGUuUUCugG-----CCGUUC-CGCGACUGG- -5'
30926 5' -54 NC_006552.1 + 10631 0.68 0.718724
Target:  5'- aGCAGucucACCGGCcacGGCgauGCUGGCCu -3'
miRNA:   3'- gCGUUuuc-UGGCCGuu-CCG---CGACUGG- -5'
30926 5' -54 NC_006552.1 + 12930 0.7 0.598836
Target:  5'- uCGCcacAAGcUCGGCcAGcGCGCUGGCCu -3'
miRNA:   3'- -GCGuu-UUCuGGCCGuUC-CGCGACUGG- -5'
30926 5' -54 NC_006552.1 + 13508 0.69 0.642717
Target:  5'- uGCcGAAGuucaccCCGGCAAGGUGCgcggucuuggUGAUCg -3'
miRNA:   3'- gCGuUUUCu-----GGCCGUUCCGCG----------ACUGG- -5'
30926 5' -54 NC_006552.1 + 13822 0.67 0.760522
Target:  5'- cCGCuguAGGuGCCGGCGcgcacguucaucAGGCGCcgguacugGGCCa -3'
miRNA:   3'- -GCGuu-UUC-UGGCCGU------------UCCGCGa-------CUGG- -5'
30926 5' -54 NC_006552.1 + 15038 0.7 0.566186
Target:  5'- aCGCG--GGGCUGcGCAgcAGGCuGUUGGCCg -3'
miRNA:   3'- -GCGUuuUCUGGC-CGU--UCCG-CGACUGG- -5'
30926 5' -54 NC_006552.1 + 15740 0.68 0.718724
Target:  5'- uGCAuguAG-CCGGCAuccGGCGgUGGCg -3'
miRNA:   3'- gCGUuu-UCuGGCCGUu--CCGCgACUGg -5'
30926 5' -54 NC_006552.1 + 16539 0.7 0.577027
Target:  5'- uCGCGGAAugcucuucGCCGGCAuGGacgccaguuCGCUGACCa -3'
miRNA:   3'- -GCGUUUUc-------UGGCCGUuCC---------GCGACUGG- -5'
30926 5' -54 NC_006552.1 + 19705 0.72 0.491166
Target:  5'- gGCAAagcGAGAuugcauuucggcgUCGGCcacguuGGCGCUGGCCg -3'
miRNA:   3'- gCGUU---UUCU-------------GGCCGuu----CCGCGACUGG- -5'
30926 5' -54 NC_006552.1 + 20371 0.7 0.577027
Target:  5'- gCGUGGAAG-CgGGCGaccucgaacAGGCGCUGcGCCa -3'
miRNA:   3'- -GCGUUUUCuGgCCGU---------UCCGCGAC-UGG- -5'
30926 5' -54 NC_006552.1 + 25056 0.73 0.404287
Target:  5'- cCGCGAAAcGACCGuaGGGGCGC-GGCg -3'
miRNA:   3'- -GCGUUUU-CUGGCcgUUCCGCGaCUGg -5'
30926 5' -54 NC_006552.1 + 26425 0.67 0.75024
Target:  5'- cCGCGAAGgcGAUCaGCGAcGGCGCcGACUc -3'
miRNA:   3'- -GCGUUUU--CUGGcCGUU-CCGCGaCUGG- -5'
30926 5' -54 NC_006552.1 + 26529 0.67 0.780681
Target:  5'- aGCGGcGGcGCCGGgGuguccagcgucAGGCGCUcGGCCu -3'
miRNA:   3'- gCGUUuUC-UGGCCgU-----------UCCGCGA-CUGG- -5'
30926 5' -54 NC_006552.1 + 27060 0.66 0.800226
Target:  5'- gGCAuuuGGAcCCGGUggGGUGaaGACg -3'
miRNA:   3'- gCGUuu-UCU-GGCCGuuCCGCgaCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.