miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30926 5' -54 NC_006552.1 + 63895 0.66 0.828206
Target:  5'- aCGCAcccAGGaACUGGCAAugcuGGUucgcauGCUGGCCa -3'
miRNA:   3'- -GCGUu--UUC-UGGCCGUU----CCG------CGACUGG- -5'
30926 5' -54 NC_006552.1 + 62166 0.81 0.144848
Target:  5'- cCGCAGuacuggcAAGACCGGUAcgGGGCGCcagGGCCa -3'
miRNA:   3'- -GCGUU-------UUCUGGCCGU--UCCGCGa--CUGG- -5'
30926 5' -54 NC_006552.1 + 62092 0.69 0.631737
Target:  5'- uGCAugaggauGGCCGGCAGaucGGCGUcgaGGCCa -3'
miRNA:   3'- gCGUuuu----CUGGCCGUU---CCGCGa--CUGG- -5'
30926 5' -54 NC_006552.1 + 60878 0.7 0.609786
Target:  5'- aGUGAAcauGugCGGCGcaccGGCGCUGGCa -3'
miRNA:   3'- gCGUUUu--CugGCCGUu---CCGCGACUGg -5'
30926 5' -54 NC_006552.1 + 59807 0.7 0.598836
Target:  5'- uGCAGAccGCCaGCAAGGUGaugGACCu -3'
miRNA:   3'- gCGUUUucUGGcCGUUCCGCga-CUGG- -5'
30926 5' -54 NC_006552.1 + 59624 0.8 0.171161
Target:  5'- gGCAGAacucGGGCCGG-GAGGUGCUGGCUg -3'
miRNA:   3'- gCGUUU----UCUGGCCgUUCCGCGACUGG- -5'
30926 5' -54 NC_006552.1 + 59378 0.68 0.733546
Target:  5'- gCGCGAgccaacgauccauggAGGGCgCGGCAgcgucAGGCGgUGGCg -3'
miRNA:   3'- -GCGUU---------------UUCUG-GCCGU-----UCCGCgACUGg -5'
30926 5' -54 NC_006552.1 + 58480 0.67 0.757451
Target:  5'- aCGCAcuGucGAgcgcugugcuucucCCGGCAacacaucaAGGCGCaGACCg -3'
miRNA:   3'- -GCGU--UuuCU--------------GGCCGU--------UCCGCGaCUGG- -5'
30926 5' -54 NC_006552.1 + 58282 0.66 0.819072
Target:  5'- uCGCGA---ACUGGUcGGGCGaaCUGGCCc -3'
miRNA:   3'- -GCGUUuucUGGCCGuUCCGC--GACUGG- -5'
30926 5' -54 NC_006552.1 + 58170 0.71 0.544673
Target:  5'- aGCAAGAGuaucuUCGGCcgcaagAAGGCcCUGGCCg -3'
miRNA:   3'- gCGUUUUCu----GGCCG------UUCCGcGACUGG- -5'
30926 5' -54 NC_006552.1 + 57147 0.7 0.566186
Target:  5'- aGCAccGGGACCuGGCGgcguuccucaAGGgGUUGACCg -3'
miRNA:   3'- gCGUu-UUCUGG-CCGU----------UCCgCGACUGG- -5'
30926 5' -54 NC_006552.1 + 56925 0.7 0.620756
Target:  5'- cCGCGcuGGACUGGCGcaacuaccccgAuGCGUUGGCCu -3'
miRNA:   3'- -GCGUuuUCUGGCCGU-----------UcCGCGACUGG- -5'
30926 5' -54 NC_006552.1 + 56716 0.68 0.708033
Target:  5'- uCGCGcgGGACCguGGCGAGGaaCUGcGCCa -3'
miRNA:   3'- -GCGUuuUCUGG--CCGUUCCgcGAC-UGG- -5'
30926 5' -54 NC_006552.1 + 56264 0.69 0.661357
Target:  5'- gGCAGccAAGGCCGGCGuccgccAGuucgccauccagcaGCGCcUGACCg -3'
miRNA:   3'- gCGUU--UUCUGGCCGU------UC--------------CGCG-ACUGG- -5'
30926 5' -54 NC_006552.1 + 55055 0.7 0.575941
Target:  5'- aGCAcuGGG-CGGCGaagaaguucccguAGGCGuCUGACCa -3'
miRNA:   3'- gCGUuuUCUgGCCGU-------------UCCGC-GACUGG- -5'
30926 5' -54 NC_006552.1 + 53976 0.71 0.543604
Target:  5'- gGCAAGccugagcAGGCaGGCcAGGCGCgUGGCCc -3'
miRNA:   3'- gCGUUU-------UCUGgCCGuUCCGCG-ACUGG- -5'
30926 5' -54 NC_006552.1 + 53780 0.66 0.831803
Target:  5'- aGCAGGAGcgcACCgaguGGCAccGGGUcgugcucuuuggccgGCUGGCCg -3'
miRNA:   3'- gCGUUUUC---UGG----CCGU--UCCG---------------CGACUGG- -5'
30926 5' -54 NC_006552.1 + 50283 0.68 0.697268
Target:  5'- aGcCAAAugcGACUGGCGcccgccGGGCGCUcACCg -3'
miRNA:   3'- gC-GUUUu--CUGGCCGU------UCCGCGAcUGG- -5'
30926 5' -54 NC_006552.1 + 48829 0.68 0.72933
Target:  5'- aGCcAAAGuuuccgccuCCGGCAuGGCGgUGAUCu -3'
miRNA:   3'- gCGuUUUCu--------GGCCGUuCCGCgACUGG- -5'
30926 5' -54 NC_006552.1 + 47638 0.66 0.819072
Target:  5'- aGCGAGAG-UCGGCAGcaaaGCG-UGGCCg -3'
miRNA:   3'- gCGUUUUCuGGCCGUUc---CGCgACUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.