Results 1 - 20 of 38 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30932 | 3' | -56.9 | NC_006552.1 | + | 52941 | 0.66 | 0.686882 |
Target: 5'- --cGCcugCGCCGGCGcccGCcGCCGGUGcGGc -3' miRNA: 3'- gaaCGa--GCGGCCGU---UGaUGGCCGU-CC- -5' |
|||||||
30932 | 3' | -56.9 | NC_006552.1 | + | 11257 | 0.66 | 0.686882 |
Target: 5'- -cUGCUCGCggaucgcguCGGcCAAUauggcccaUGCCGGCGGa -3' miRNA: 3'- gaACGAGCG---------GCC-GUUG--------AUGGCCGUCc -5' |
|||||||
30932 | 3' | -56.9 | NC_006552.1 | + | 12823 | 0.66 | 0.680494 |
Target: 5'- -cUGCggGuuGGCGacagccuucugcugcGCUGcCCGGCGGGc -3' miRNA: 3'- gaACGagCggCCGU---------------UGAU-GGCCGUCC- -5' |
|||||||
30932 | 3' | -56.9 | NC_006552.1 | + | 55793 | 0.66 | 0.676226 |
Target: 5'- -gUG-UCGCUGGuCGACUacgccACCGcGCAGGc -3' miRNA: 3'- gaACgAGCGGCC-GUUGA-----UGGC-CGUCC- -5' |
|||||||
30932 | 3' | -56.9 | NC_006552.1 | + | 2056 | 0.66 | 0.67409 |
Target: 5'- gCUUGagcgCGCCGGCGucgugcgcggccuGCUgaucgaacucgacGCCGGCGGc -3' miRNA: 3'- -GAACga--GCGGCCGU-------------UGA-------------UGGCCGUCc -5' |
|||||||
30932 | 3' | -56.9 | NC_006552.1 | + | 26207 | 0.66 | 0.665531 |
Target: 5'- -gUGCUUGCCGGuCGGC-AUgGGCgacAGGu -3' miRNA: 3'- gaACGAGCGGCC-GUUGaUGgCCG---UCC- -5' |
|||||||
30932 | 3' | -56.9 | NC_006552.1 | + | 55433 | 0.66 | 0.665531 |
Target: 5'- -cUGUUCGCCc---ACUACCaGCAGGg -3' miRNA: 3'- gaACGAGCGGccguUGAUGGcCGUCC- -5' |
|||||||
30932 | 3' | -56.9 | NC_006552.1 | + | 59616 | 0.66 | 0.665531 |
Target: 5'- --gGC-CGCCuGGCAgaACUcggGCCGGgAGGu -3' miRNA: 3'- gaaCGaGCGG-CCGU--UGA---UGGCCgUCC- -5' |
|||||||
30932 | 3' | -56.9 | NC_006552.1 | + | 39286 | 0.66 | 0.665531 |
Target: 5'- --cGCU-GCCGGCGcaGgaAgCGGCAGGc -3' miRNA: 3'- gaaCGAgCGGCCGU--UgaUgGCCGUCC- -5' |
|||||||
30932 | 3' | -56.9 | NC_006552.1 | + | 3323 | 0.66 | 0.64406 |
Target: 5'- -gUGCUUGCCGG-AACUGCCGa---- -3' miRNA: 3'- gaACGAGCGGCCgUUGAUGGCcgucc -5' |
|||||||
30932 | 3' | -56.9 | NC_006552.1 | + | 62442 | 0.67 | 0.633305 |
Target: 5'- -gUGCcCGCCGGCGuu--CCGGCGc- -3' miRNA: 3'- gaACGaGCGGCCGUugauGGCCGUcc -5' |
|||||||
30932 | 3' | -56.9 | NC_006552.1 | + | 49097 | 0.67 | 0.610725 |
Target: 5'- -gUGC-CGCCGGCAccGCUGCCccacgucagccgcGGCGc- -3' miRNA: 3'- gaACGaGCGGCCGU--UGAUGG-------------CCGUcc -5' |
|||||||
30932 | 3' | -56.9 | NC_006552.1 | + | 44468 | 0.67 | 0.601067 |
Target: 5'- --cGCU-GCCGGC----GCCGGCAGa -3' miRNA: 3'- gaaCGAgCGGCCGuugaUGGCCGUCc -5' |
|||||||
30932 | 3' | -56.9 | NC_006552.1 | + | 35608 | 0.67 | 0.601067 |
Target: 5'- cCUUGCUCuccgcaauggaGUCGGCGu---CCGGguGGg -3' miRNA: 3'- -GAACGAG-----------CGGCCGUugauGGCCguCC- -5' |
|||||||
30932 | 3' | -56.9 | NC_006552.1 | + | 10834 | 0.67 | 0.596781 |
Target: 5'- gUUGUUCGCCgggcugcGGCGcugccgacucuucgGCUGCCGGCu-- -3' miRNA: 3'- gAACGAGCGG-------CCGU--------------UGAUGGCCGucc -5' |
|||||||
30932 | 3' | -56.9 | NC_006552.1 | + | 38161 | 0.67 | 0.590361 |
Target: 5'- -cUGCUgGCCgcGGUAGCUGuuGGUgcuGGGa -3' miRNA: 3'- gaACGAgCGG--CCGUUGAUggCCG---UCC- -5' |
|||||||
30932 | 3' | -56.9 | NC_006552.1 | + | 30901 | 0.67 | 0.590361 |
Target: 5'- -cUGCU-GCUGGCAGCgguCgGGCGGa -3' miRNA: 3'- gaACGAgCGGCCGUUGau-GgCCGUCc -5' |
|||||||
30932 | 3' | -56.9 | NC_006552.1 | + | 15838 | 0.67 | 0.590361 |
Target: 5'- --gGCUUGCCGGCGAacaaauuCCaGGCGGc -3' miRNA: 3'- gaaCGAGCGGCCGUUgau----GG-CCGUCc -5' |
|||||||
30932 | 3' | -56.9 | NC_006552.1 | + | 32138 | 0.68 | 0.579688 |
Target: 5'- --gGCUUGCCGGUgcauGCgcgccauuCCGGCAGc -3' miRNA: 3'- gaaCGAGCGGCCGu---UGau------GGCCGUCc -5' |
|||||||
30932 | 3' | -56.9 | NC_006552.1 | + | 39704 | 0.68 | 0.537486 |
Target: 5'- uUUcCUUGUCGGCGACggcucGCCaGGCGGGc -3' miRNA: 3'- gAAcGAGCGGCCGUUGa----UGG-CCGUCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home