miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30932 5' -56.1 NC_006552.1 + 64795 0.66 0.702856
Target:  5'- -uCCUGCcgGAAacGGCGUuuccGGCCGGGCc -3'
miRNA:   3'- cuGGACGa-CUUcaCCGCG----UUGGUCCG- -5'
30932 5' -56.1 NC_006552.1 + 49393 0.66 0.702856
Target:  5'- cGACaaGCUGAuGacGCGCAGUCAGGCc -3'
miRNA:   3'- -CUGgaCGACUuCacCGCGUUGGUCCG- -5'
30932 5' -56.1 NC_006552.1 + 28729 0.66 0.702856
Target:  5'- cGAUCUGCggGAAGccGGCcgGCGGCgaAGGCa -3'
miRNA:   3'- -CUGGACGa-CUUCa-CCG--CGUUGg-UCCG- -5'
30932 5' -56.1 NC_006552.1 + 33522 0.66 0.692082
Target:  5'- cGCCuUGCUGGAacUGGUGCG--CAGGCg -3'
miRNA:   3'- cUGG-ACGACUUc-ACCGCGUugGUCCG- -5'
30932 5' -56.1 NC_006552.1 + 14435 0.66 0.670374
Target:  5'- --gCUGCUGGcaucGGUGGUGgAACUGGGa -3'
miRNA:   3'- cugGACGACU----UCACCGCgUUGGUCCg -5'
30932 5' -56.1 NC_006552.1 + 44570 0.66 0.659461
Target:  5'- cGCCUGCUGcc-UGGCacgaGUGAgCAGGCg -3'
miRNA:   3'- cUGGACGACuucACCG----CGUUgGUCCG- -5'
30932 5' -56.1 NC_006552.1 + 13820 0.66 0.658368
Target:  5'- aGCC-GCUGuAGGUgccGGCGCGcacguucAUCAGGCg -3'
miRNA:   3'- cUGGaCGAC-UUCA---CCGCGU-------UGGUCCG- -5'
30932 5' -56.1 NC_006552.1 + 62996 0.67 0.648523
Target:  5'- gGACCUGCgccgccagguguUGGAGaaaaUGGCcgcccagcGCAACCuGGCc -3'
miRNA:   3'- -CUGGACG------------ACUUC----ACCG--------CGUUGGuCCG- -5'
30932 5' -56.1 NC_006552.1 + 15981 0.67 0.63757
Target:  5'- aGCCUGCUGGA---GCGCGGCCugcuGCa -3'
miRNA:   3'- cUGGACGACUUcacCGCGUUGGuc--CG- -5'
30932 5' -56.1 NC_006552.1 + 40354 0.67 0.625516
Target:  5'- -uCCUGgUGGaaccAGaUGGCGCAGCCAucgcugcGGCc -3'
miRNA:   3'- cuGGACgACU----UC-ACCGCGUUGGU-------CCG- -5'
30932 5' -56.1 NC_006552.1 + 56922 0.67 0.615659
Target:  5'- cGCCcgcGCUGGAcUGGCGCAACUAccccgaugcguuGGCc -3'
miRNA:   3'- cUGGa--CGACUUcACCGCGUUGGU------------CCG- -5'
30932 5' -56.1 NC_006552.1 + 49189 0.67 0.593804
Target:  5'- cGGCCUGgUccGGcUGGUcaGCAACCGGGUg -3'
miRNA:   3'- -CUGGACgAcuUC-ACCG--CGUUGGUCCG- -5'
30932 5' -56.1 NC_006552.1 + 58390 0.67 0.593804
Target:  5'- aGACCgGCUacGGUGaGCGCGAa-GGGCa -3'
miRNA:   3'- -CUGGaCGAcuUCAC-CGCGUUggUCCG- -5'
30932 5' -56.1 NC_006552.1 + 32663 0.68 0.581835
Target:  5'- gGGCCUGCUGAGccuGCGCGAUCAccugcuuGGUg -3'
miRNA:   3'- -CUGGACGACUUcacCGCGUUGGU-------CCG- -5'
30932 5' -56.1 NC_006552.1 + 47700 0.68 0.561284
Target:  5'- cGCCcaGCcgGAGGUGGCGCGuaacGCC-GGCc -3'
miRNA:   3'- cUGGa-CGa-CUUCACCGCGU----UGGuCCG- -5'
30932 5' -56.1 NC_006552.1 + 29839 0.68 0.52927
Target:  5'- --aCUGCUGGAGgGGaCGUAGCCgcuGGGUa -3'
miRNA:   3'- cugGACGACUUCaCC-GCGUUGG---UCCG- -5'
30932 5' -56.1 NC_006552.1 + 58599 0.69 0.508304
Target:  5'- aGCCcGUUGAuggugggcgucGGUGGcCGCG-CCGGGCa -3'
miRNA:   3'- cUGGaCGACU-----------UCACC-GCGUuGGUCCG- -5'
30932 5' -56.1 NC_006552.1 + 28294 0.7 0.46749
Target:  5'- cGAUCgcGUUGAAGUGGaucgacagaGCcGCCAGGCc -3'
miRNA:   3'- -CUGGa-CGACUUCACCg--------CGuUGGUCCG- -5'
30932 5' -56.1 NC_006552.1 + 45859 0.7 0.45755
Target:  5'- cACCUGCg-----GGCGUcugAACCAGGCg -3'
miRNA:   3'- cUGGACGacuucaCCGCG---UUGGUCCG- -5'
30932 5' -56.1 NC_006552.1 + 57456 0.7 0.45755
Target:  5'- aGACUacuuuUGCggcgGAGGUGGCGCcgguaCGGGCu -3'
miRNA:   3'- -CUGG-----ACGa---CUUCACCGCGuug--GUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.