miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30935 5' -51.6 NC_006552.1 + 2701 0.66 0.920331
Target:  5'- gUGGCGcauggacgcuucuucAgCGCAGCUugGCGccAUCGCGCg -3'
miRNA:   3'- -ACCGU---------------UgGUGUUGGuaCGU--UAGCGCG- -5'
30935 5' -51.6 NC_006552.1 + 28388 0.66 0.917841
Target:  5'- gGGCAACUugauauccgGCGGCUcgAUGCuguaGCGCg -3'
miRNA:   3'- aCCGUUGG---------UGUUGG--UACGuuagCGCG- -5'
30935 5' -51.6 NC_006552.1 + 26859 0.66 0.917841
Target:  5'- gGGCucucGCCGCcGCguUGCAG-CGCGg -3'
miRNA:   3'- aCCGu---UGGUGuUGguACGUUaGCGCg -5'
30935 5' -51.6 NC_006552.1 + 21977 0.66 0.917841
Target:  5'- -aGCAguaCGCGACCGUGCA---GCGCc -3'
miRNA:   3'- acCGUug-GUGUUGGUACGUuagCGCG- -5'
30935 5' -51.6 NC_006552.1 + 20486 0.66 0.917841
Target:  5'- aGGUGGCCGCuugcACCAggauGUCGCGg -3'
miRNA:   3'- aCCGUUGGUGu---UGGUacguUAGCGCg -5'
30935 5' -51.6 NC_006552.1 + 25895 0.66 0.917841
Target:  5'- cGGCGACCgGCgAGCCAUcCGGUgaUGCGUu -3'
miRNA:   3'- aCCGUUGG-UG-UUGGUAcGUUA--GCGCG- -5'
30935 5' -51.6 NC_006552.1 + 62758 0.66 0.917841
Target:  5'- gGGCGcuGCCGC-GCC-UGCGAgCGaCGCc -3'
miRNA:   3'- aCCGU--UGGUGuUGGuACGUUaGC-GCG- -5'
30935 5' -51.6 NC_006552.1 + 45253 0.66 0.917211
Target:  5'- cGGCAACCGaugcguuccaaacCGGCCAaGCGGUguaucgaGUGCg -3'
miRNA:   3'- aCCGUUGGU-------------GUUGGUaCGUUAg------CGCG- -5'
30935 5' -51.6 NC_006552.1 + 40576 0.66 0.91402
Target:  5'- uUGGUGGCCACGuACCAcGCAcgcugGUCcgggucgauggugauGCGCu -3'
miRNA:   3'- -ACCGUUGGUGU-UGGUaCGU-----UAG---------------CGCG- -5'
30935 5' -51.6 NC_006552.1 + 53621 0.66 0.911415
Target:  5'- aGGUggaGGCCugAGCCAUGgCA--CGCGg -3'
miRNA:   3'- aCCG---UUGGugUUGGUAC-GUuaGCGCg -5'
30935 5' -51.6 NC_006552.1 + 12291 0.66 0.911415
Target:  5'- cGGCccgcucguugagGGCCugAGCCAUggugcGUAGUCGCucgGCg -3'
miRNA:   3'- aCCG------------UUGGugUUGGUA-----CGUUAGCG---CG- -5'
30935 5' -51.6 NC_006552.1 + 31285 0.66 0.911415
Target:  5'- cGGUAGCCGuguCGAUgaAUGCAAUCaGCGg -3'
miRNA:   3'- aCCGUUGGU---GUUGg-UACGUUAG-CGCg -5'
30935 5' -51.6 NC_006552.1 + 26780 0.66 0.911415
Target:  5'- cUGGCG--CACAgagGCCc-GCAGUUGCGCc -3'
miRNA:   3'- -ACCGUugGUGU---UGGuaCGUUAGCGCG- -5'
30935 5' -51.6 NC_006552.1 + 61690 0.66 0.904702
Target:  5'- cUGGCcgcucGACCAC-GCCG-GCAuccucaccgCGCGCg -3'
miRNA:   3'- -ACCG-----UUGGUGuUGGUaCGUua-------GCGCG- -5'
30935 5' -51.6 NC_006552.1 + 20381 0.66 0.904702
Target:  5'- gGGCGACCucgaACAggcgcugcGCCAUGUucUgGUGCa -3'
miRNA:   3'- aCCGUUGG----UGU--------UGGUACGuuAgCGCG- -5'
30935 5' -51.6 NC_006552.1 + 58902 0.66 0.904015
Target:  5'- cGGUAACCaacucggGCAGCCA-GCA---GCGCc -3'
miRNA:   3'- aCCGUUGG-------UGUUGGUaCGUuagCGCG- -5'
30935 5' -51.6 NC_006552.1 + 63077 0.66 0.900538
Target:  5'- gGGCAugGCCaACGccgucgccgagaacuGCCGUGCGAUgGUGg -3'
miRNA:   3'- aCCGU--UGG-UGU---------------UGGUACGUUAgCGCg -5'
30935 5' -51.6 NC_006552.1 + 13720 0.66 0.897706
Target:  5'- uUGGCcuucugccaGGCCACGAauGUGuCGAUgGCGCg -3'
miRNA:   3'- -ACCG---------UUGGUGUUggUAC-GUUAgCGCG- -5'
30935 5' -51.6 NC_006552.1 + 21844 0.66 0.897706
Target:  5'- cGGCAuCCGauACCA---GGUCGCGCg -3'
miRNA:   3'- aCCGUuGGUguUGGUacgUUAGCGCG- -5'
30935 5' -51.6 NC_006552.1 + 40645 0.66 0.893374
Target:  5'- gUGGCuuCCACcagaucgaaguauUCGUGCuccUCGCGCg -3'
miRNA:   3'- -ACCGuuGGUGuu-----------GGUACGuu-AGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.