Results 1 - 20 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30935 | 5' | -51.6 | NC_006552.1 | + | 44390 | 0.72 | 0.620112 |
Target: 5'- gGGU--CCagucaGCAGCCcgGCGAUUGCGCu -3' miRNA: 3'- aCCGuuGG-----UGUUGGuaCGUUAGCGCG- -5' |
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30935 | 5' | -51.6 | NC_006552.1 | + | 2701 | 0.66 | 0.920331 |
Target: 5'- gUGGCGcauggacgcuucuucAgCGCAGCUugGCGccAUCGCGCg -3' miRNA: 3'- -ACCGU---------------UgGUGUUGGuaCGU--UAGCGCG- -5' |
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30935 | 5' | -51.6 | NC_006552.1 | + | 13214 | 0.71 | 0.665092 |
Target: 5'- cGGCggUCGCcuccCCAcUGCGcgCGCGCu -3' miRNA: 3'- aCCGuuGGUGuu--GGU-ACGUuaGCGCG- -5' |
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30935 | 5' | -51.6 | NC_006552.1 | + | 28641 | 0.71 | 0.665092 |
Target: 5'- aGGUAACgGCGGCCGUagGCAAUCaugGCuGCa -3' miRNA: 3'- aCCGUUGgUGUUGGUA--CGUUAG---CG-CG- -5' |
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30935 | 5' | -51.6 | NC_006552.1 | + | 11685 | 0.71 | 0.665092 |
Target: 5'- cUGGgGGCCAUGACgAUGCGGUucugccCGCGUu -3' miRNA: 3'- -ACCgUUGGUGUUGgUACGUUA------GCGCG- -5' |
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30935 | 5' | -51.6 | NC_006552.1 | + | 5129 | 0.71 | 0.665092 |
Target: 5'- cGGCAccugCACGGCgAUGCA-UUGCGCa -3' miRNA: 3'- aCCGUug--GUGUUGgUACGUuAGCGCG- -5' |
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30935 | 5' | -51.6 | NC_006552.1 | + | 55339 | 0.71 | 0.653867 |
Target: 5'- aGGCGACCGCGACUucGUGgGGUUcaGcCGCg -3' miRNA: 3'- aCCGUUGGUGUUGG--UACgUUAG--C-GCG- -5' |
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30935 | 5' | -51.6 | NC_006552.1 | + | 20523 | 0.71 | 0.653867 |
Target: 5'- cGGCcGCCuuCAGCCGgccuUGC--UCGCGCa -3' miRNA: 3'- aCCGuUGGu-GUUGGU----ACGuuAGCGCG- -5' |
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30935 | 5' | -51.6 | NC_006552.1 | + | 54680 | 0.71 | 0.642622 |
Target: 5'- cGGCAACCAUGACCGaGUGGcUGCGa -3' miRNA: 3'- aCCGUUGGUGUUGGUaCGUUaGCGCg -5' |
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30935 | 5' | -51.6 | NC_006552.1 | + | 15977 | 0.71 | 0.642622 |
Target: 5'- cGGCAGCCugcuggagcGCGGCCugcUGCAccaacuggucaGUUGCGCc -3' miRNA: 3'- aCCGUUGG---------UGUUGGu--ACGU-----------UAGCGCG- -5' |
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30935 | 5' | -51.6 | NC_006552.1 | + | 44608 | 0.72 | 0.620112 |
Target: 5'- cGGCAAUgAacGCCAUGCg--CGCGCc -3' miRNA: 3'- aCCGUUGgUguUGGUACGuuaGCGCG- -5' |
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30935 | 5' | -51.6 | NC_006552.1 | + | 35421 | 0.79 | 0.275063 |
Target: 5'- aUGGCAGCCugGGCCGcaGCcuUCGCGUc -3' miRNA: 3'- -ACCGUUGGugUUGGUa-CGuuAGCGCG- -5' |
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30935 | 5' | -51.6 | NC_006552.1 | + | 62226 | 0.73 | 0.564198 |
Target: 5'- gGGCGgaucACCGagucCAGCCAcGgAAUCGCGCg -3' miRNA: 3'- aCCGU----UGGU----GUUGGUaCgUUAGCGCG- -5' |
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30935 | 5' | -51.6 | NC_006552.1 | + | 8119 | 0.73 | 0.552051 |
Target: 5'- cGGcCAugCAuCAGCCAucUGCGccaggugGUCGCGCa -3' miRNA: 3'- aCC-GUugGU-GUUGGU--ACGU-------UAGCGCG- -5' |
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30935 | 5' | -51.6 | NC_006552.1 | + | 53145 | 0.74 | 0.499054 |
Target: 5'- cGGCAacACCAuCGAUCGcuuugagGCGAUCGUGCg -3' miRNA: 3'- aCCGU--UGGU-GUUGGUa------CGUUAGCGCG- -5' |
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30935 | 5' | -51.6 | NC_006552.1 | + | 4818 | 0.74 | 0.499054 |
Target: 5'- gGGCGAUgCGCAcgcGCaCAggGCGGUCGCGCa -3' miRNA: 3'- aCCGUUG-GUGU---UG-GUa-CGUUAGCGCG- -5' |
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30935 | 5' | -51.6 | NC_006552.1 | + | 44182 | 0.74 | 0.488509 |
Target: 5'- cGGCGcGCCgACGGuCCAUGUcuUCGCGCu -3' miRNA: 3'- aCCGU-UGG-UGUU-GGUACGuuAGCGCG- -5' |
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30935 | 5' | -51.6 | NC_006552.1 | + | 12188 | 0.75 | 0.437472 |
Target: 5'- gUGGCGGCCAguGCCuUGUcgGAcCGCGCa -3' miRNA: 3'- -ACCGUUGGUguUGGuACG--UUaGCGCG- -5' |
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30935 | 5' | -51.6 | NC_006552.1 | + | 43998 | 0.75 | 0.427634 |
Target: 5'- cGGCGACCAgGGCCAgGCGAaccUCGC-Cg -3' miRNA: 3'- aCCGUUGGUgUUGGUaCGUU---AGCGcG- -5' |
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30935 | 5' | -51.6 | NC_006552.1 | + | 23133 | 0.75 | 0.408358 |
Target: 5'- cUGGUAGgCguaGAgCAUGCAAUCGCGCu -3' miRNA: 3'- -ACCGUUgGug-UUgGUACGUUAGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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