miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30935 5' -51.6 NC_006552.1 + 24425 0.67 0.875061
Target:  5'- gGGCAGaCgCACGuuuCCAaGCugcUCGCGCa -3'
miRNA:   3'- aCCGUU-G-GUGUu--GGUaCGuu-AGCGCG- -5'
30935 5' -51.6 NC_006552.1 + 56262 0.67 0.875061
Target:  5'- cUGGCAGCCAaGGCCG-GC-GUC-CGCc -3'
miRNA:   3'- -ACCGUUGGUgUUGGUaCGuUAGcGCG- -5'
30935 5' -51.6 NC_006552.1 + 49186 0.67 0.877435
Target:  5'- cGGCGGCCugguccggcuggucaGCAACCggGUgaucuacGGUCGCGa -3'
miRNA:   3'- aCCGUUGG---------------UGUUGGuaCG-------UUAGCGCg -5'
30935 5' -51.6 NC_006552.1 + 13894 0.67 0.88288
Target:  5'- gUGGCuugcuCCACGGCCGccUGCugagcAUCgGUGCg -3'
miRNA:   3'- -ACCGuu---GGUGUUGGU--ACGu----UAG-CGCG- -5'
30935 5' -51.6 NC_006552.1 + 26456 0.67 0.88288
Target:  5'- cUGGgGGCCGCGcaGCCAcGCcacagcCGCGCc -3'
miRNA:   3'- -ACCgUUGGUGU--UGGUaCGuua---GCGCG- -5'
30935 5' -51.6 NC_006552.1 + 10623 0.67 0.885933
Target:  5'- aUGGCGccagcagucucaccgGCCACGGCgAUGCuggccugauGAUCGCu- -3'
miRNA:   3'- -ACCGU---------------UGGUGUUGgUACG---------UUAGCGcg -5'
30935 5' -51.6 NC_006552.1 + 58119 0.66 0.888942
Target:  5'- gGGCAgcagaaguggaagACCGCAGCCGacUGCAucgacugGUCGUa- -3'
miRNA:   3'- aCCGU-------------UGGUGUUGGU--ACGU-------UAGCGcg -5'
30935 5' -51.6 NC_006552.1 + 20486 0.66 0.917841
Target:  5'- aGGUGGCCGCuugcACCAggauGUCGCGg -3'
miRNA:   3'- aCCGUUGGUGu---UGGUacguUAGCGCg -5'
30935 5' -51.6 NC_006552.1 + 53621 0.66 0.911415
Target:  5'- aGGUggaGGCCugAGCCAUGgCA--CGCGg -3'
miRNA:   3'- aCCG---UUGGugUUGGUAC-GUuaGCGCg -5'
30935 5' -51.6 NC_006552.1 + 26780 0.66 0.911415
Target:  5'- cUGGCG--CACAgagGCCc-GCAGUUGCGCc -3'
miRNA:   3'- -ACCGUugGUGU---UGGuaCGUUAGCGCG- -5'
30935 5' -51.6 NC_006552.1 + 12291 0.66 0.911415
Target:  5'- cGGCccgcucguugagGGCCugAGCCAUggugcGUAGUCGCucgGCg -3'
miRNA:   3'- aCCG------------UUGGugUUGGUA-----CGUUAGCG---CG- -5'
30935 5' -51.6 NC_006552.1 + 31285 0.66 0.911415
Target:  5'- cGGUAGCCGuguCGAUgaAUGCAAUCaGCGg -3'
miRNA:   3'- aCCGUUGGU---GUUGg-UACGUUAG-CGCg -5'
30935 5' -51.6 NC_006552.1 + 40576 0.66 0.91402
Target:  5'- uUGGUGGCCACGuACCAcGCAcgcugGUCcgggucgauggugauGCGCu -3'
miRNA:   3'- -ACCGUUGGUGU-UGGUaCGU-----UAG---------------CGCG- -5'
30935 5' -51.6 NC_006552.1 + 45253 0.66 0.917211
Target:  5'- cGGCAACCGaugcguuccaaacCGGCCAaGCGGUguaucgaGUGCg -3'
miRNA:   3'- aCCGUUGGU-------------GUUGGUaCGUUAg------CGCG- -5'
30935 5' -51.6 NC_006552.1 + 25895 0.66 0.917841
Target:  5'- cGGCGACCgGCgAGCCAUcCGGUgaUGCGUu -3'
miRNA:   3'- aCCGUUGG-UG-UUGGUAcGUUA--GCGCG- -5'
30935 5' -51.6 NC_006552.1 + 2701 0.66 0.920331
Target:  5'- gUGGCGcauggacgcuucuucAgCGCAGCUugGCGccAUCGCGCg -3'
miRNA:   3'- -ACCGU---------------UgGUGUUGGuaCGU--UAGCGCG- -5'
30935 5' -51.6 NC_006552.1 + 62758 0.66 0.917841
Target:  5'- gGGCGcuGCCGC-GCC-UGCGAgCGaCGCc -3'
miRNA:   3'- aCCGU--UGGUGuUGGuACGUUaGC-GCG- -5'
30935 5' -51.6 NC_006552.1 + 26859 0.66 0.917841
Target:  5'- gGGCucucGCCGCcGCguUGCAG-CGCGg -3'
miRNA:   3'- aCCGu---UGGUGuUGguACGUUaGCGCg -5'
30935 5' -51.6 NC_006552.1 + 61690 0.66 0.904702
Target:  5'- cUGGCcgcucGACCAC-GCCG-GCAuccucaccgCGCGCg -3'
miRNA:   3'- -ACCG-----UUGGUGuUGGUaCGUua-------GCGCG- -5'
30935 5' -51.6 NC_006552.1 + 28388 0.66 0.917841
Target:  5'- gGGCAACUugauauccgGCGGCUcgAUGCuguaGCGCg -3'
miRNA:   3'- aCCGUUGG---------UGUUGG--UACGuuagCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.