miRNA display CGI


Results 41 - 60 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30991 3' -58.5 NC_006560.1 + 135968 0.7 0.592595
Target:  5'- gAUCGCCGACaUCACCC--GGcgCGCGGu -3'
miRNA:   3'- -UGGUGGCUG-AGUGGGguCCuaGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 54532 0.7 0.602616
Target:  5'- cCCGCCGACgcCGUCCgAGGggCGCAGg -3'
miRNA:   3'- uGGUGGCUGa-GUGGGgUCCuaGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 72601 0.69 0.622715
Target:  5'- aGCCuGCCGACUCGgacCCgCCGGGccgCGCGGc -3'
miRNA:   3'- -UGG-UGGCUGAGU---GG-GGUCCua-GCGUC- -5'
30991 3' -58.5 NC_006560.1 + 57718 0.69 0.632779
Target:  5'- aGCaCGCCGGCgaggagcaGCCCCGGGAggggggaCGCGGc -3'
miRNA:   3'- -UG-GUGGCUGag------UGGGGUCCUa------GCGUC- -5'
30991 3' -58.5 NC_006560.1 + 47008 0.69 0.632779
Target:  5'- cCCGCgGGCcgCGCCCgCGGGcgcUCGCAGg -3'
miRNA:   3'- uGGUGgCUGa-GUGGG-GUCCu--AGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 53092 0.69 0.642842
Target:  5'- cACCugCGGCUCgugGCCCaccuguGGGAgCGCGGa -3'
miRNA:   3'- -UGGugGCUGAG---UGGGg-----UCCUaGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 84358 0.69 0.662937
Target:  5'- cGCCucCCGGCUCG-CCCGGGAcCGCc- -3'
miRNA:   3'- -UGGu-GGCUGAGUgGGGUCCUaGCGuc -5'
30991 3' -58.5 NC_006560.1 + 69784 0.68 0.672952
Target:  5'- cCCGCCGuGCUCuccgACCCCGGGuUCGUc- -3'
miRNA:   3'- uGGUGGC-UGAG----UGGGGUCCuAGCGuc -5'
30991 3' -58.5 NC_006560.1 + 71179 0.68 0.672952
Target:  5'- cGCCGCgGACUCcUCCCGGGAggagucCGCc- -3'
miRNA:   3'- -UGGUGgCUGAGuGGGGUCCUa-----GCGuc -5'
30991 3' -58.5 NC_006560.1 + 7410 0.68 0.672952
Target:  5'- cCCGCCGGCcCcgggACCCCAGGcagcccCGCGGa -3'
miRNA:   3'- uGGUGGCUGaG----UGGGGUCCua----GCGUC- -5'
30991 3' -58.5 NC_006560.1 + 48063 0.68 0.679943
Target:  5'- -aCACCGAuggggcCUCGCCCCcccggcgucccaccGGGggCGCGGa -3'
miRNA:   3'- ugGUGGCU------GAGUGGGG--------------UCCuaGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 5080 0.68 0.682934
Target:  5'- gUCGCCGGCgugcggCGCgccgCCCGGGGUCgGCGGg -3'
miRNA:   3'- uGGUGGCUGa-----GUG----GGGUCCUAG-CGUC- -5'
30991 3' -58.5 NC_006560.1 + 5136 0.68 0.692877
Target:  5'- -aCACCGACUCGCggcgcggggCCCGGGccggggcCGCGGg -3'
miRNA:   3'- ugGUGGCUGAGUG---------GGGUCCua-----GCGUC- -5'
30991 3' -58.5 NC_006560.1 + 42944 0.68 0.693868
Target:  5'- -gCGCCGGCUCcaGCCCCgcGGGGgcguacgugcgagcgCGCAGg -3'
miRNA:   3'- ugGUGGCUGAG--UGGGG--UCCUa--------------GCGUC- -5'
30991 3' -58.5 NC_006560.1 + 66306 0.68 0.700796
Target:  5'- gAUCGCCGAUcuggggCGCCCCGGGuugccggugugCGCGGc -3'
miRNA:   3'- -UGGUGGCUGa-----GUGGGGUCCua---------GCGUC- -5'
30991 3' -58.5 NC_006560.1 + 11578 0.68 0.70277
Target:  5'- gACCuCCG-C-CGCCUCgGGGGUCGCGGg -3'
miRNA:   3'- -UGGuGGCuGaGUGGGG-UCCUAGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 97382 0.68 0.70277
Target:  5'- gGCgGCCGGCcgggggCgACCCCGGGGagGCGGc -3'
miRNA:   3'- -UGgUGGCUGa-----G-UGGGGUCCUagCGUC- -5'
30991 3' -58.5 NC_006560.1 + 124999 0.68 0.70277
Target:  5'- cCCGCCGACgccggCgACCCCGuGGUCGCc- -3'
miRNA:   3'- uGGUGGCUGa----G-UGGGGUcCUAGCGuc -5'
30991 3' -58.5 NC_006560.1 + 110438 0.68 0.70277
Target:  5'- gGCCGCCG-C-CGCCCUGuGGGUgGCGGc -3'
miRNA:   3'- -UGGUGGCuGaGUGGGGU-CCUAgCGUC- -5'
30991 3' -58.5 NC_006560.1 + 97598 0.68 0.70277
Target:  5'- cCCGCCGGCUgaACCCCGGcGccAUCGCc- -3'
miRNA:   3'- uGGUGGCUGAg-UGGGGUC-C--UAGCGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.