miRNA display CGI


Results 41 - 60 of 306 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30991 5' -67.8 NC_006560.1 + 149131 0.74 0.130198
Target:  5'- gGACCAUUGGCuCCgCCGcGGCGCGGGGcGg -3'
miRNA:   3'- -CUGGUGGCUG-GG-GGCcCCGCGCCCC-C- -5'
30991 5' -67.8 NC_006560.1 + 55308 0.74 0.130198
Target:  5'- cACCuGCUGGCCCaCGGGGuCGCGGGGcGg -3'
miRNA:   3'- cUGG-UGGCUGGGgGCCCC-GCGCCCC-C- -5'
30991 5' -67.8 NC_006560.1 + 50250 0.74 0.132374
Target:  5'- uGGCCGCCGcGCCUCCGGGcggccgggcucggcGCGCccccGGGGGu -3'
miRNA:   3'- -CUGGUGGC-UGGGGGCCC--------------CGCG----CCCCC- -5'
30991 5' -67.8 NC_006560.1 + 45793 0.74 0.132374
Target:  5'- -uCCGCCGgggccuuuugGCCCCCGGGGCGgagcacaggaagacCGGGGu -3'
miRNA:   3'- cuGGUGGC----------UGGGGGCCCCGC--------------GCCCCc -5'
30991 5' -67.8 NC_006560.1 + 120123 0.74 0.133317
Target:  5'- cGCC-CUGGgCCCCGGGGCGUGGuGGc -3'
miRNA:   3'- cUGGuGGCUgGGGGCCCCGCGCC-CCc -5'
30991 5' -67.8 NC_006560.1 + 42539 0.74 0.133317
Target:  5'- aGCC-CCaGCgCCCCGGGGuCGCGcGGGGa -3'
miRNA:   3'- cUGGuGGcUG-GGGGCCCC-GCGC-CCCC- -5'
30991 5' -67.8 NC_006560.1 + 70709 0.74 0.136504
Target:  5'- cGCCACgGGCCCCCGGcGCGUGGccgaguucguccGGGa -3'
miRNA:   3'- cUGGUGgCUGGGGGCCcCGCGCC------------CCC- -5'
30991 5' -67.8 NC_006560.1 + 11577 0.74 0.136504
Target:  5'- cGACCuCCGccGCCUCgGGGGuCGCGGGGu -3'
miRNA:   3'- -CUGGuGGC--UGGGGgCCCC-GCGCCCCc -5'
30991 5' -67.8 NC_006560.1 + 147895 0.74 0.136504
Target:  5'- aGACgGCgcaGACCUCgCGGGGCggggGCGGGGGa -3'
miRNA:   3'- -CUGgUGg--CUGGGG-GCCCCG----CGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 11246 0.74 0.136504
Target:  5'- cGCCGCuUGGCCCgaCGGGGCGacucCGGGGGu -3'
miRNA:   3'- cUGGUG-GCUGGGg-GCCCCGC----GCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 34976 0.74 0.136504
Target:  5'- -uCCGCCgGGCCCCCcGGGCGCcucGGGGc -3'
miRNA:   3'- cuGGUGG-CUGGGGGcCCCGCGc--CCCC- -5'
30991 5' -67.8 NC_006560.1 + 5130 0.74 0.138777
Target:  5'- uGACCcacACCGacucgcggcgcgggGCCCgggCCGGGGcCGCGGGGGc -3'
miRNA:   3'- -CUGG---UGGC--------------UGGG---GGCCCC-GCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 16203 0.74 0.138777
Target:  5'- cGGCCACCGGCggagccgggCCCGcGGGCccggcaucgucgagGCGGGGGg -3'
miRNA:   3'- -CUGGUGGCUGg--------GGGC-CCCG--------------CGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 88771 0.74 0.139762
Target:  5'- --gCGCgGACCCCCGGccGGC-CGGGGGu -3'
miRNA:   3'- cugGUGgCUGGGGGCC--CCGcGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 65097 0.73 0.142755
Target:  5'- uGCgAUCGACaccauggCCCCGGGGCgggccGCGGGGGc -3'
miRNA:   3'- cUGgUGGCUG-------GGGGCCCCG-----CGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 147187 0.73 0.143091
Target:  5'- -cCCGCCcccuCCCCCucccccgccGGaGGCGCGGGGGg -3'
miRNA:   3'- cuGGUGGcu--GGGGG---------CC-CCGCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 45431 0.73 0.146492
Target:  5'- cGCgCACUGGCgCCCGGGcagccaucGCGUGGGGGu -3'
miRNA:   3'- cUG-GUGGCUGgGGGCCC--------CGCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 85514 0.73 0.146492
Target:  5'- gGGCUGCUG-CCCgCgGGGGCGCuuGGGGGg -3'
miRNA:   3'- -CUGGUGGCuGGG-GgCCCCGCG--CCCCC- -5'
30991 5' -67.8 NC_006560.1 + 22837 0.73 0.146492
Target:  5'- aGCCcCCG-CCCCCGGGGCGCGugcucuacGGcGGc -3'
miRNA:   3'- cUGGuGGCuGGGGGCCCCGCGC--------CC-CC- -5'
30991 5' -67.8 NC_006560.1 + 122634 0.73 0.146492
Target:  5'- -cCCGCCcGCCCCUGcGGCccGCGGGGGg -3'
miRNA:   3'- cuGGUGGcUGGGGGCcCCG--CGCCCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.