miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30992 5' -50.1 NC_006560.1 + 149109 1.16 0.004541
Target:  5'- gGGCGUCCCCGUGAAUAAUUCAGGACCa -3'
miRNA:   3'- -CCGCAGGGGCACUUAUUAAGUCCUGG- -5'
30992 5' -50.1 NC_006560.1 + 148549 0.66 0.996404
Target:  5'- uGGUGUCCCCGgcguuAUAugcgcCGGGAgCCc -3'
miRNA:   3'- -CCGCAGGGGCacu--UAUuaa--GUCCU-GG- -5'
30992 5' -50.1 NC_006560.1 + 148251 0.68 0.988635
Target:  5'- cGGCGgCUgCGgacgcgGAGUAGcgCGGGGCCg -3'
miRNA:   3'- -CCGCaGGgGCa-----CUUAUUaaGUCCUGG- -5'
30992 5' -50.1 NC_006560.1 + 147587 0.68 0.990019
Target:  5'- cGGUGcggCCCCcgaggGUGAcgGAggcCGGGGCCg -3'
miRNA:   3'- -CCGCa--GGGG-----CACUuaUUaa-GUCCUGG- -5'
30992 5' -50.1 NC_006560.1 + 146936 0.66 0.997828
Target:  5'- uGCGUCUgggCC-UGGGccUGcgUCAGGGCCg -3'
miRNA:   3'- cCGCAGG---GGcACUU--AUuaAGUCCUGG- -5'
30992 5' -50.1 NC_006560.1 + 146199 0.67 0.995786
Target:  5'- aGGCaGUCgCCCGUGAcggucuuguUGAggUAGGGCg -3'
miRNA:   3'- -CCG-CAG-GGGCACUu--------AUUaaGUCCUGg -5'
30992 5' -50.1 NC_006560.1 + 142518 0.69 0.981562
Target:  5'- cGGCGcCCCCG-GGg-----CGGGGCCc -3'
miRNA:   3'- -CCGCaGGGGCaCUuauuaaGUCCUGG- -5'
30992 5' -50.1 NC_006560.1 + 140389 0.76 0.740037
Target:  5'- cGGuCGUCCCCGgGGggGGUUCAGcGCCg -3'
miRNA:   3'- -CC-GCAGGGGCaCUuaUUAAGUCcUGG- -5'
30992 5' -50.1 NC_006560.1 + 135596 0.67 0.99239
Target:  5'- gGGUG-CCCCGgccGcAGUGGUUcCGGGACg -3'
miRNA:   3'- -CCGCaGGGGCa--C-UUAUUAA-GUCCUGg -5'
30992 5' -50.1 NC_006560.1 + 134481 0.66 0.996404
Target:  5'- cGCgGUCCCCGUcGuucuugcggcccagCAGGACCu -3'
miRNA:   3'- cCG-CAGGGGCA-Cuuauuaa-------GUCCUGG- -5'
30992 5' -50.1 NC_006560.1 + 130847 0.66 0.997374
Target:  5'- uGGUG-CCCCGgggcuacGAGUAcuucgcgGUUCGGG-CCg -3'
miRNA:   3'- -CCGCaGGGGCa------CUUAU-------UAAGUCCuGG- -5'
30992 5' -50.1 NC_006560.1 + 128961 0.68 0.988635
Target:  5'- uGCGUCCgCGUGcgc--UUCuGGGGCCa -3'
miRNA:   3'- cCGCAGGgGCACuuauuAAG-UCCUGG- -5'
30992 5' -50.1 NC_006560.1 + 128314 0.69 0.974397
Target:  5'- gGGCGUCCCCccGGGgc---CGGGACg -3'
miRNA:   3'- -CCGCAGGGGcaCUUauuaaGUCCUGg -5'
30992 5' -50.1 NC_006560.1 + 126041 0.69 0.981562
Target:  5'- aGGCGaCCCCGUGGg-----CGGGGgCg -3'
miRNA:   3'- -CCGCaGGGGCACUuauuaaGUCCUgG- -5'
30992 5' -50.1 NC_006560.1 + 125725 0.66 0.996227
Target:  5'- -aCGUCCUCGUGAccgaccggggAGGACCg -3'
miRNA:   3'- ccGCAGGGGCACUuauuaag---UCCUGG- -5'
30992 5' -50.1 NC_006560.1 + 124361 0.72 0.920119
Target:  5'- cGGCGaCCCCuggacGUGGAgccccUCGGGGCCc -3'
miRNA:   3'- -CCGCaGGGG-----CACUUauua-AGUCCUGG- -5'
30992 5' -50.1 NC_006560.1 + 121919 0.66 0.997828
Target:  5'- cGCG-CCCCGcgGGAUGGaccgCGGGcCCg -3'
miRNA:   3'- cCGCaGGGGCa-CUUAUUaa--GUCCuGG- -5'
30992 5' -50.1 NC_006560.1 + 120344 0.67 0.994289
Target:  5'- aGGCGUgccccugcgucaCCCCGUGcAUGu----GGGCCa -3'
miRNA:   3'- -CCGCA------------GGGGCACuUAUuaaguCCUGG- -5'
30992 5' -50.1 NC_006560.1 + 118750 0.66 0.996404
Target:  5'- cGGCuGUCCCCGgc----GUcCAGGACg -3'
miRNA:   3'- -CCG-CAGGGGCacuuauUAaGUCCUGg -5'
30992 5' -50.1 NC_006560.1 + 114074 0.69 0.976979
Target:  5'- cGCGcCCCCGUGAcgGAcaUgGGGAaCCu -3'
miRNA:   3'- cCGCaGGGGCACUuaUUa-AgUCCU-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.