miRNA display CGI


Results 41 - 60 of 347 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30995 3' -66.9 NC_006560.1 + 112205 0.75 0.108382
Target:  5'- -aGCucCCCgCGGGCCCCgCCGCCCgCCUUc -3'
miRNA:   3'- uaUGu-GGG-GCCCGGGG-GGUGGG-GGAG- -5'
30995 3' -66.9 NC_006560.1 + 10260 0.74 0.113862
Target:  5'- -gGCgGCCCCGGccucGgCUCCCGCCCCCUCc -3'
miRNA:   3'- uaUG-UGGGGCC----CgGGGGGUGGGGGAG- -5'
30995 3' -66.9 NC_006560.1 + 79665 0.74 0.113862
Target:  5'- -gGCGCCCCccgcucGGcGCCCCCCGCCgCCCc- -3'
miRNA:   3'- uaUGUGGGG------CC-CGGGGGGUGG-GGGag -5'
30995 3' -66.9 NC_006560.1 + 1237 0.74 0.114989
Target:  5'- -cGCGCCCCcacgcagccccggcgGGGCCCCCgcgaaGCCCCCg- -3'
miRNA:   3'- uaUGUGGGG---------------CCCGGGGGg----UGGGGGag -5'
30995 3' -66.9 NC_006560.1 + 143146 0.74 0.119014
Target:  5'- -cGCAcCCCCGGccGCCCCCCcgcacacacaucCCCCCUCu -3'
miRNA:   3'- uaUGU-GGGGCC--CGGGGGGu-----------GGGGGAG- -5'
30995 3' -66.9 NC_006560.1 + 60683 0.74 0.1196
Target:  5'- -cGCGCCCCuGGcGCCCCCC-CUCgCCUCc -3'
miRNA:   3'- uaUGUGGGG-CC-CGGGGGGuGGG-GGAG- -5'
30995 3' -66.9 NC_006560.1 + 79299 0.74 0.1196
Target:  5'- --uCGCCgCCGGGCCCggCCGCCCCCa- -3'
miRNA:   3'- uauGUGG-GGCCCGGGg-GGUGGGGGag -5'
30995 3' -66.9 NC_006560.1 + 145003 0.74 0.122569
Target:  5'- -cGCGCCCuCGGGCggagCCCCCGgCCCCg- -3'
miRNA:   3'- uaUGUGGG-GCCCG----GGGGGUgGGGGag -5'
30995 3' -66.9 NC_006560.1 + 60276 0.74 0.122569
Target:  5'- -cGC-CCCCGGGCCCggcgccaagCCCGCCCUCa- -3'
miRNA:   3'- uaUGuGGGGCCCGGG---------GGGUGGGGGag -5'
30995 3' -66.9 NC_006560.1 + 72389 0.74 0.122569
Target:  5'- -cGCugCCCGc-CCCCCCACCCuCCUCc -3'
miRNA:   3'- uaUGugGGGCccGGGGGGUGGG-GGAG- -5'
30995 3' -66.9 NC_006560.1 + 142505 0.73 0.131891
Target:  5'- -gGCG-CCCGGGCCCCggCGCCCCCg- -3'
miRNA:   3'- uaUGUgGGGCCCGGGGg-GUGGGGGag -5'
30995 3' -66.9 NC_006560.1 + 54247 0.73 0.131891
Target:  5'- -gGCGCCCgGccccGCgCCCCCAUCCCCUCc -3'
miRNA:   3'- uaUGUGGGgCc---CG-GGGGGUGGGGGAG- -5'
30995 3' -66.9 NC_006560.1 + 50429 0.73 0.131891
Target:  5'- aGUGC-CCCCGGGCCCgCC-CCCCg-- -3'
miRNA:   3'- -UAUGuGGGGCCCGGGgGGuGGGGgag -5'
30995 3' -66.9 NC_006560.1 + 1421 0.73 0.135141
Target:  5'- -cGCcCCCCGcGGCCCUCgC-CCCCCUCc -3'
miRNA:   3'- uaUGuGGGGC-CCGGGGG-GuGGGGGAG- -5'
30995 3' -66.9 NC_006560.1 + 145098 0.73 0.135141
Target:  5'- ---aGCCCCugGGGCagCCCCCGCCCCC-Cg -3'
miRNA:   3'- uaugUGGGG--CCCG--GGGGGUGGGGGaG- -5'
30995 3' -66.9 NC_006560.1 + 148221 0.73 0.135141
Target:  5'- -cGCGCCCCuu-CCCCCCucccuCCCCCUCg -3'
miRNA:   3'- uaUGUGGGGcccGGGGGGu----GGGGGAG- -5'
30995 3' -66.9 NC_006560.1 + 326 0.73 0.135141
Target:  5'- -aAgGCCCC-GGCCCCCUcucGCCCCuCUCg -3'
miRNA:   3'- uaUgUGGGGcCCGGGGGG---UGGGG-GAG- -5'
30995 3' -66.9 NC_006560.1 + 86895 0.73 0.135141
Target:  5'- -cGCGuCCuCCGGGCCgCCCC-CCCCgUCg -3'
miRNA:   3'- uaUGU-GG-GGCCCGG-GGGGuGGGGgAG- -5'
30995 3' -66.9 NC_006560.1 + 145317 0.73 0.138464
Target:  5'- --cCGCCCCcgcgggGGGCCCUCUGCCCCC-Cg -3'
miRNA:   3'- uauGUGGGG------CCCGGGGGGUGGGGGaG- -5'
30995 3' -66.9 NC_006560.1 + 73987 0.73 0.138464
Target:  5'- -gGCGCgggCCCGGGUCcccgCCCCGCCCCCg- -3'
miRNA:   3'- uaUGUG---GGGCCCGG----GGGGUGGGGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.