Results 41 - 60 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30997 | 3' | -59.5 | NC_006560.1 | + | 150209 | 0.69 | 0.563091 |
Target: 5'- gGGUGgcGAGCGcGCGG-ACGCUgCCGg -3' miRNA: 3'- aCCACaaCUCGU-CGUCgUGCGGgGGC- -5' |
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30997 | 3' | -59.5 | NC_006560.1 | + | 133961 | 0.69 | 0.583041 |
Target: 5'- gGGUcGUcggGGGCcGCGGCGCcccCCCCCGg -3' miRNA: 3'- aCCA-CAa--CUCGuCGUCGUGc--GGGGGC- -5' |
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30997 | 3' | -59.5 | NC_006560.1 | + | 144131 | 0.69 | 0.583041 |
Target: 5'- cGGcGgcc-GCGGCGGCGCcCCCCCGg -3' miRNA: 3'- aCCaCaacuCGUCGUCGUGcGGGGGC- -5' |
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30997 | 3' | -59.5 | NC_006560.1 | + | 125443 | 0.69 | 0.583041 |
Target: 5'- cUGGUGaccuucaucGGGCGGCAccGCACGCCCgaCGa -3' miRNA: 3'- -ACCACaa-------CUCGUCGU--CGUGCGGGg-GC- -5' |
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30997 | 3' | -59.5 | NC_006560.1 | + | 56449 | 0.68 | 0.593071 |
Target: 5'- gGGUcGagGAgGCGGCccucGGCGCGCCCUCGc -3' miRNA: 3'- aCCA-CaaCU-CGUCG----UCGUGCGGGGGC- -5' |
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30997 | 3' | -59.5 | NC_006560.1 | + | 75344 | 0.68 | 0.593071 |
Target: 5'- aGGUGgucgGGGCgacgcGGCGGCGCGCCgaCGa -3' miRNA: 3'- aCCACaa--CUCG-----UCGUCGUGCGGggGC- -5' |
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30997 | 3' | -59.5 | NC_006560.1 | + | 125835 | 0.68 | 0.593071 |
Target: 5'- gGGUGgUGAcGCAGCccccgAGC-CaGCCCCCGc -3' miRNA: 3'- aCCACaACU-CGUCG-----UCGuG-CGGGGGC- -5' |
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30997 | 3' | -59.5 | NC_006560.1 | + | 18559 | 0.68 | 0.602122 |
Target: 5'- gGGUGgucgGGGCGGCGgaccucuGCGCGCCguuCCUGg -3' miRNA: 3'- aCCACaa--CUCGUCGU-------CGUGCGG---GGGC- -5' |
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30997 | 3' | -59.5 | NC_006560.1 | + | 37315 | 0.68 | 0.603129 |
Target: 5'- cUGGUGUUccuGUGGCgcuAGCcCGCCCCCu -3' miRNA: 3'- -ACCACAAcu-CGUCG---UCGuGCGGGGGc -5' |
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30997 | 3' | -59.5 | NC_006560.1 | + | 57422 | 0.68 | 0.603129 |
Target: 5'- cGGcGaccucgGGGCGGCAgaaccgcgcGCugGCCCCCGc -3' miRNA: 3'- aCCaCaa----CUCGUCGU---------CGugCGGGGGC- -5' |
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30997 | 3' | -59.5 | NC_006560.1 | + | 133694 | 0.68 | 0.603129 |
Target: 5'- cGG-GaUGGGCGcgcGCAGCACGUCCgCGa -3' miRNA: 3'- aCCaCaACUCGU---CGUCGUGCGGGgGC- -5' |
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30997 | 3' | -59.5 | NC_006560.1 | + | 110550 | 0.68 | 0.603129 |
Target: 5'- gGGUGggugGGGcCAGCGGgguauauaaacCGCGCUCCCGc -3' miRNA: 3'- aCCACaa--CUC-GUCGUC-----------GUGCGGGGGC- -5' |
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30997 | 3' | -59.5 | NC_006560.1 | + | 121408 | 0.68 | 0.609174 |
Target: 5'- aGGUGUUGAggacgcuGUAGUaggcguugcgcuggGGCACGacguCCCCCGg -3' miRNA: 3'- aCCACAACU-------CGUCG--------------UCGUGC----GGGGGC- -5' |
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30997 | 3' | -59.5 | NC_006560.1 | + | 109182 | 0.68 | 0.613207 |
Target: 5'- cGGUcgcgUGGGCGGCAgacggaguagacGCAC-CCCCCGc -3' miRNA: 3'- aCCAca--ACUCGUCGU------------CGUGcGGGGGC- -5' |
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30997 | 3' | -59.5 | NC_006560.1 | + | 19696 | 0.68 | 0.613207 |
Target: 5'- cUGGcGUcgGAGCGGUcGCACGCCaCgCCGu -3' miRNA: 3'- -ACCaCAa-CUCGUCGuCGUGCGG-G-GGC- -5' |
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30997 | 3' | -59.5 | NC_006560.1 | + | 131389 | 0.68 | 0.6233 |
Target: 5'- cGGUGcUG-GCgGGCGcuggccgcggacGCGCGCCCCUGg -3' miRNA: 3'- aCCACaACuCG-UCGU------------CGUGCGGGGGC- -5' |
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30997 | 3' | -59.5 | NC_006560.1 | + | 96332 | 0.68 | 0.629359 |
Target: 5'- gUGGUGcaguucGAGCAGCcccggccgugcccGCGCGCgCCCGa -3' miRNA: 3'- -ACCACaa----CUCGUCGu------------CGUGCGgGGGC- -5' |
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30997 | 3' | -59.5 | NC_006560.1 | + | 50214 | 0.68 | 0.632389 |
Target: 5'- cGGgc---GGCGGCGGCGCGCguccgccCCCCGg -3' miRNA: 3'- aCCacaacUCGUCGUCGUGCG-------GGGGC- -5' |
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30997 | 3' | -59.5 | NC_006560.1 | + | 79458 | 0.68 | 0.633399 |
Target: 5'- cGGcGcgUGAGCccccGGCGGCGCGugagcCCCCCGc -3' miRNA: 3'- aCCaCa-ACUCG----UCGUCGUGC-----GGGGGC- -5' |
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30997 | 3' | -59.5 | NC_006560.1 | + | 12768 | 0.68 | 0.643497 |
Target: 5'- ---aGUUGGGCGGCAGCugGgCCgagaCCGc -3' miRNA: 3'- accaCAACUCGUCGUCGugCgGG----GGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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