miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30997 5' -58.6 NC_006560.1 + 139913 1.07 0.002326
Target:  5'- uUCCAGACACCCGUGGCCGCUCAUCGUc -3'
miRNA:   3'- -AGGUCUGUGGGCACCGGCGAGUAGCA- -5'
30997 5' -58.6 NC_006560.1 + 19578 0.74 0.358153
Target:  5'- aCCGGGCgGCgCCGcGGcCCGCUCGUCGUc -3'
miRNA:   3'- aGGUCUG-UG-GGCaCC-GGCGAGUAGCA- -5'
30997 5' -58.6 NC_006560.1 + 76111 0.74 0.358153
Target:  5'- --aGGACGCCC-UGGCCGCgugCGUCGg -3'
miRNA:   3'- aggUCUGUGGGcACCGGCGa--GUAGCa -5'
30997 5' -58.6 NC_006560.1 + 24315 0.74 0.365993
Target:  5'- cUCCGGccGCGCCCucgGGCCGCUCcgCGc -3'
miRNA:   3'- -AGGUC--UGUGGGca-CCGGCGAGuaGCa -5'
30997 5' -58.6 NC_006560.1 + 90857 0.73 0.432834
Target:  5'- cCCGGGCcacgagggccgGCCCGcGGCCccGCUCGUCGg -3'
miRNA:   3'- aGGUCUG-----------UGGGCaCCGG--CGAGUAGCa -5'
30997 5' -58.6 NC_006560.1 + 107012 0.72 0.450626
Target:  5'- cCCGGGCcugcgaggGCCCGUcgcacaacgcgGaGCCGCUCGUCGUc -3'
miRNA:   3'- aGGUCUG--------UGGGCA-----------C-CGGCGAGUAGCA- -5'
30997 5' -58.6 NC_006560.1 + 63910 0.72 0.459672
Target:  5'- cUCCAGguacacggucACGCCCGUgGGCCGCaggcucuggUCGUUGUa -3'
miRNA:   3'- -AGGUC----------UGUGGGCA-CCGGCG---------AGUAGCA- -5'
30997 5' -58.6 NC_006560.1 + 77042 0.72 0.478046
Target:  5'- uUCCgGGGCGCCCG-GGCC-CUCGUCc- -3'
miRNA:   3'- -AGG-UCUGUGGGCaCCGGcGAGUAGca -5'
30997 5' -58.6 NC_006560.1 + 20396 0.72 0.487367
Target:  5'- cCCGcGCACCCG-GGaCCGCUgGUCGg -3'
miRNA:   3'- aGGUcUGUGGGCaCC-GGCGAgUAGCa -5'
30997 5' -58.6 NC_006560.1 + 139258 0.71 0.506262
Target:  5'- cCCGGACcCCCGggGGCgCGCggUCGUCGg -3'
miRNA:   3'- aGGUCUGuGGGCa-CCG-GCG--AGUAGCa -5'
30997 5' -58.6 NC_006560.1 + 40096 0.71 0.539065
Target:  5'- gCgGGGCGCCCG-GGCCGCcgggcggagacucgCGUCGUc -3'
miRNA:   3'- aGgUCUGUGGGCaCCGGCGa-------------GUAGCA- -5'
30997 5' -58.6 NC_006560.1 + 14220 0.7 0.544932
Target:  5'- gCgGGGCGCCCGcGGUCGCggggaUCGUCGa -3'
miRNA:   3'- aGgUCUGUGGGCaCCGGCG-----AGUAGCa -5'
30997 5' -58.6 NC_006560.1 + 128737 0.7 0.574549
Target:  5'- gUCguGGCGCCCGcGGCCGCUgGcccgcccaguucUCGg -3'
miRNA:   3'- -AGguCUGUGGGCaCCGGCGAgU------------AGCa -5'
30997 5' -58.6 NC_006560.1 + 669 0.7 0.574549
Target:  5'- cCCGGcGCGCCCGcGGCgcggGCUCGUCGc -3'
miRNA:   3'- aGGUC-UGUGGGCaCCGg---CGAGUAGCa -5'
30997 5' -58.6 NC_006560.1 + 115870 0.7 0.584508
Target:  5'- cCCuGGCGCCCGUGGCCcgggugugcacGUUCGaCGg -3'
miRNA:   3'- aGGuCUGUGGGCACCGG-----------CGAGUaGCa -5'
30997 5' -58.6 NC_006560.1 + 115767 0.7 0.5945
Target:  5'- cCCgAGGCGCCCG-GGCCGCcgCAggaCGg -3'
miRNA:   3'- aGG-UCUGUGGGCaCCGGCGa-GUa--GCa -5'
30997 5' -58.6 NC_006560.1 + 37690 0.69 0.604519
Target:  5'- gCCGGGCGCCg--GGCCGCUC-UUGa -3'
miRNA:   3'- aGGUCUGUGGgcaCCGGCGAGuAGCa -5'
30997 5' -58.6 NC_006560.1 + 104909 0.69 0.614558
Target:  5'- uUCCgaGGAgAuCCCGgGaGCCGCUCGUCGg -3'
miRNA:   3'- -AGG--UCUgU-GGGCaC-CGGCGAGUAGCa -5'
30997 5' -58.6 NC_006560.1 + 3874 0.69 0.62461
Target:  5'- gCCAGGCACuCCGcGGCgGCgucggcggCGUCGg -3'
miRNA:   3'- aGGUCUGUG-GGCaCCGgCGa-------GUAGCa -5'
30997 5' -58.6 NC_006560.1 + 138249 0.69 0.634667
Target:  5'- -gCAGACGCCCGUGGgCCuGCUgGUg-- -3'
miRNA:   3'- agGUCUGUGGGCACC-GG-CGAgUAgca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.