miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30997 5' -58.6 NC_006560.1 + 669 0.7 0.574549
Target:  5'- cCCGGcGCGCCCGcGGCgcggGCUCGUCGc -3'
miRNA:   3'- aGGUC-UGUGGGCaCCGg---CGAGUAGCa -5'
30997 5' -58.6 NC_006560.1 + 3874 0.69 0.62461
Target:  5'- gCCAGGCACuCCGcGGCgGCgucggcggCGUCGg -3'
miRNA:   3'- aGGUCUGUG-GGCaCCGgCGa-------GUAGCa -5'
30997 5' -58.6 NC_006560.1 + 4999 0.66 0.779815
Target:  5'- gCCGGGggcggggUGCCCGUcGCCGC-CGUCGUc -3'
miRNA:   3'- aGGUCU-------GUGGGCAcCGGCGaGUAGCA- -5'
30997 5' -58.6 NC_006560.1 + 11294 0.66 0.824428
Target:  5'- cCCAGGCGCgCCaG-GGCCGcCUCGUUc- -3'
miRNA:   3'- aGGUCUGUG-GG-CaCCGGC-GAGUAGca -5'
30997 5' -58.6 NC_006560.1 + 11503 0.67 0.771566
Target:  5'- cUCGGGCGCCgGggaGG-CGCUCGUCGc -3'
miRNA:   3'- aGGUCUGUGGgCa--CCgGCGAGUAGCa -5'
30997 5' -58.6 NC_006560.1 + 12799 0.68 0.664796
Target:  5'- --gAGGgACCCGUcggccgggGGCCGCUCGUCc- -3'
miRNA:   3'- aggUCUgUGGGCA--------CCGGCGAGUAGca -5'
30997 5' -58.6 NC_006560.1 + 14220 0.7 0.544932
Target:  5'- gCgGGGCGCCCGcGGUCGCggggaUCGUCGa -3'
miRNA:   3'- aGgUCUGUGGGCaCCGGCG-----AGUAGCa -5'
30997 5' -58.6 NC_006560.1 + 17177 0.67 0.7434
Target:  5'- aCCAGGCACgUGaGGCCGCcCAcCGg -3'
miRNA:   3'- aGGUCUGUGgGCaCCGGCGaGUaGCa -5'
30997 5' -58.6 NC_006560.1 + 19578 0.74 0.358153
Target:  5'- aCCGGGCgGCgCCGcGGcCCGCUCGUCGUc -3'
miRNA:   3'- aGGUCUG-UG-GGCaCC-GGCGAGUAGCA- -5'
30997 5' -58.6 NC_006560.1 + 20396 0.72 0.487367
Target:  5'- cCCGcGCACCCG-GGaCCGCUgGUCGg -3'
miRNA:   3'- aGGUcUGUGGGCaCC-GGCGAgUAGCa -5'
30997 5' -58.6 NC_006560.1 + 22174 0.68 0.714389
Target:  5'- cCCGGGCGCuguccccgCCGUcggGGCCGC-CGUCGc -3'
miRNA:   3'- aGGUCUGUG--------GGCA---CCGGCGaGUAGCa -5'
30997 5' -58.6 NC_006560.1 + 24315 0.74 0.365993
Target:  5'- cUCCGGccGCGCCCucgGGCCGCUCcgCGc -3'
miRNA:   3'- -AGGUC--UGUGGGca-CCGGCGAGuaGCa -5'
30997 5' -58.6 NC_006560.1 + 34988 0.67 0.733812
Target:  5'- cCCGGGCGCCuCGgGGCCGCgggcCGg -3'
miRNA:   3'- aGGUCUGUGG-GCaCCGGCGaguaGCa -5'
30997 5' -58.6 NC_006560.1 + 35782 0.66 0.807399
Target:  5'- gCCuGACGCCCGggaggcGGCUGCg-GUCGc -3'
miRNA:   3'- aGGuCUGUGGGCa-----CCGGCGagUAGCa -5'
30997 5' -58.6 NC_006560.1 + 35912 0.67 0.75195
Target:  5'- cUCCGGGCuguCCGUuucacgcGGCCGCUC-UCGc -3'
miRNA:   3'- -AGGUCUGug-GGCA-------CCGGCGAGuAGCa -5'
30997 5' -58.6 NC_006560.1 + 37690 0.69 0.604519
Target:  5'- gCCGGGCGCCg--GGCCGCUC-UUGa -3'
miRNA:   3'- aGGUCUGUGGgcaCCGGCGAGuAGCa -5'
30997 5' -58.6 NC_006560.1 + 40096 0.71 0.539065
Target:  5'- gCgGGGCGCCCG-GGCCGCcgggcggagacucgCGUCGUc -3'
miRNA:   3'- aGgUCUGUGGGCaCCGGCGa-------------GUAGCA- -5'
30997 5' -58.6 NC_006560.1 + 42127 0.66 0.777991
Target:  5'- cCCGGACGCcagcgccucggcguCCG-GGUCGCcgUCGUCGUc -3'
miRNA:   3'- aGGUCUGUG--------------GGCaCCGGCG--AGUAGCA- -5'
30997 5' -58.6 NC_006560.1 + 53625 0.66 0.807399
Target:  5'- cUCCcucGGCGCCCuGcGGCgGCUCGUUGc -3'
miRNA:   3'- -AGGu--CUGUGGG-CaCCGgCGAGUAGCa -5'
30997 5' -58.6 NC_006560.1 + 58742 0.66 0.807399
Target:  5'- gCCGGACgccgagaagcGCCCGUugGGCCccaGCUCcagaGUCGUg -3'
miRNA:   3'- aGGUCUG----------UGGGCA--CCGG---CGAG----UAGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.