miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30997 5' -58.6 NC_006560.1 + 146285 0.66 0.824428
Target:  5'- gCCGGACGCCgCGggGGCgCGgUCggCGUc -3'
miRNA:   3'- aGGUCUGUGG-GCa-CCG-GCgAGuaGCA- -5'
30997 5' -58.6 NC_006560.1 + 139913 1.07 0.002326
Target:  5'- uUCCAGACACCCGUGGCCGCUCAUCGUc -3'
miRNA:   3'- -AGGUCUGUGGGCACCGGCGAGUAGCA- -5'
30997 5' -58.6 NC_006560.1 + 139258 0.71 0.506262
Target:  5'- cCCGGACcCCCGggGGCgCGCggUCGUCGg -3'
miRNA:   3'- aGGUCUGuGGGCa-CCG-GCG--AGUAGCa -5'
30997 5' -58.6 NC_006560.1 + 138249 0.69 0.634667
Target:  5'- -gCAGACGCCCGUGGgCCuGCUgGUg-- -3'
miRNA:   3'- agGUCUGUGGGCACC-GG-CGAgUAgca -5'
30997 5' -58.6 NC_006560.1 + 128737 0.7 0.574549
Target:  5'- gUCguGGCGCCCGcGGCCGCUgGcccgcccaguucUCGg -3'
miRNA:   3'- -AGguCUGUGGGCaCCGGCGAgU------------AGCa -5'
30997 5' -58.6 NC_006560.1 + 127785 0.66 0.824428
Target:  5'- cCCGGACACgaGUG--UGCUCGUCGUc -3'
miRNA:   3'- aGGUCUGUGggCACcgGCGAGUAGCA- -5'
30997 5' -58.6 NC_006560.1 + 120466 0.69 0.644722
Target:  5'- cUCGGcucCACCCGcgGGCCGCgCAUCGc -3'
miRNA:   3'- aGGUCu--GUGGGCa-CCGGCGaGUAGCa -5'
30997 5' -58.6 NC_006560.1 + 115870 0.7 0.584508
Target:  5'- cCCuGGCGCCCGUGGCCcgggugugcacGUUCGaCGg -3'
miRNA:   3'- aGGuCUGUGGGCACCGG-----------CGAGUaGCa -5'
30997 5' -58.6 NC_006560.1 + 115767 0.7 0.5945
Target:  5'- cCCgAGGCGCCCG-GGCCGCcgCAggaCGg -3'
miRNA:   3'- aGG-UCUGUGGGCaCCGGCGa-GUa--GCa -5'
30997 5' -58.6 NC_006560.1 + 115166 0.67 0.752895
Target:  5'- gCCAGGCcCCCGacacgcuggGGCUGCUCcuggCGUa -3'
miRNA:   3'- aGGUCUGuGGGCa--------CCGGCGAGua--GCA- -5'
30997 5' -58.6 NC_006560.1 + 111537 0.66 0.807399
Target:  5'- -gCGGGCgGCCCGUGGacggagUGCUCGUCa- -3'
miRNA:   3'- agGUCUG-UGGGCACCg-----GCGAGUAGca -5'
30997 5' -58.6 NC_006560.1 + 109034 0.67 0.762286
Target:  5'- gUCCAGgaACACCuCGUgcucgcccaccGGCCGCaCGUCGc -3'
miRNA:   3'- -AGGUC--UGUGG-GCA-----------CCGGCGaGUAGCa -5'
30997 5' -58.6 NC_006560.1 + 107892 0.66 0.815995
Target:  5'- -gCGGGCgACCCGggUGGCCGCggccaAUCGc -3'
miRNA:   3'- agGUCUG-UGGGC--ACCGGCGag---UAGCa -5'
30997 5' -58.6 NC_006560.1 + 107012 0.72 0.450626
Target:  5'- cCCGGGCcugcgaggGCCCGUcgcacaacgcgGaGCCGCUCGUCGUc -3'
miRNA:   3'- aGGUCUG--------UGGGCA-----------C-CGGCGAGUAGCA- -5'
30997 5' -58.6 NC_006560.1 + 105781 0.68 0.674799
Target:  5'- cCCcGACGCCgcgaCGUGGCCGCUgG-CGg -3'
miRNA:   3'- aGGuCUGUGG----GCACCGGCGAgUaGCa -5'
30997 5' -58.6 NC_006560.1 + 104909 0.69 0.614558
Target:  5'- uUCCgaGGAgAuCCCGgGaGCCGCUCGUCGg -3'
miRNA:   3'- -AGG--UCUgU-GGGCaC-CGGCGAGUAGCa -5'
30997 5' -58.6 NC_006560.1 + 95860 0.66 0.824428
Target:  5'- gCCGGACggcggcaucgGCCCGcGGUCGgUCGUgGUg -3'
miRNA:   3'- aGGUCUG----------UGGGCaCCGGCgAGUAgCA- -5'
30997 5' -58.6 NC_006560.1 + 90857 0.73 0.432834
Target:  5'- cCCGGGCcacgagggccgGCCCGcGGCCccGCUCGUCGg -3'
miRNA:   3'- aGGUCUG-----------UGGGCaCCGG--CGAGUAGCa -5'
30997 5' -58.6 NC_006560.1 + 89753 0.67 0.762286
Target:  5'- uUCgAGGCcaaCGUGGCCGUcgUCGUCGg -3'
miRNA:   3'- -AGgUCUGuggGCACCGGCG--AGUAGCa -5'
30997 5' -58.6 NC_006560.1 + 83022 0.67 0.771566
Target:  5'- cCCAGuGCGCCgccggcaucuuCGUGGCCGCguUCGaguUCGUg -3'
miRNA:   3'- aGGUC-UGUGG-----------GCACCGGCG--AGU---AGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.