miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30997 5' -58.6 NC_006560.1 + 63910 0.72 0.459672
Target:  5'- cUCCAGguacacggucACGCCCGUgGGCCGCaggcucuggUCGUUGUa -3'
miRNA:   3'- -AGGUC----------UGUGGGCA-CCGGCG---------AGUAGCA- -5'
30997 5' -58.6 NC_006560.1 + 66247 0.68 0.664796
Target:  5'- cCCGGGCGCCCGaaGCacaGCUCggCGUc -3'
miRNA:   3'- aGGUCUGUGGGCacCGg--CGAGuaGCA- -5'
30997 5' -58.6 NC_006560.1 + 71849 0.66 0.807399
Target:  5'- gCgGGGCcuggGCCCGgcGGCCGCU-GUCGUa -3'
miRNA:   3'- aGgUCUG----UGGGCa-CCGGCGAgUAGCA- -5'
30997 5' -58.6 NC_006560.1 + 76111 0.74 0.358153
Target:  5'- --aGGACGCCC-UGGCCGCgugCGUCGg -3'
miRNA:   3'- aggUCUGUGGGcACCGGCGa--GUAGCa -5'
30997 5' -58.6 NC_006560.1 + 76967 0.66 0.780726
Target:  5'- gCC-GACGCCCuGggccGGCUGCUgGUCGa -3'
miRNA:   3'- aGGuCUGUGGG-Ca---CCGGCGAgUAGCa -5'
30997 5' -58.6 NC_006560.1 + 77042 0.72 0.478046
Target:  5'- uUCCgGGGCGCCCG-GGCC-CUCGUCc- -3'
miRNA:   3'- -AGG-UCUGUGGGCaCCGGcGAGUAGca -5'
30997 5' -58.6 NC_006560.1 + 78110 0.66 0.798651
Target:  5'- cCCGGGCGCUgGUGGCgG-UCAgCGUg -3'
miRNA:   3'- aGGUCUGUGGgCACCGgCgAGUaGCA- -5'
30997 5' -58.6 NC_006560.1 + 80052 0.66 0.798651
Target:  5'- cCCGGACACCCGggcGGUCGgaCGccccccUCGc -3'
miRNA:   3'- aGGUCUGUGGGCa--CCGGCgaGU------AGCa -5'
30997 5' -58.6 NC_006560.1 + 83022 0.67 0.771566
Target:  5'- cCCAGuGCGCCgccggcaucuuCGUGGCCGCguUCGaguUCGUg -3'
miRNA:   3'- aGGUC-UGUGG-----------GCACCGGCG--AGU---AGCA- -5'
30997 5' -58.6 NC_006560.1 + 89753 0.67 0.762286
Target:  5'- uUCgAGGCcaaCGUGGCCGUcgUCGUCGg -3'
miRNA:   3'- -AGgUCUGuggGCACCGGCG--AGUAGCa -5'
30997 5' -58.6 NC_006560.1 + 90857 0.73 0.432834
Target:  5'- cCCGGGCcacgagggccgGCCCGcGGCCccGCUCGUCGg -3'
miRNA:   3'- aGGUCUG-----------UGGGCaCCGG--CGAGUAGCa -5'
30997 5' -58.6 NC_006560.1 + 95860 0.66 0.824428
Target:  5'- gCCGGACggcggcaucgGCCCGcGGUCGgUCGUgGUg -3'
miRNA:   3'- aGGUCUG----------UGGGCaCCGGCgAGUAgCA- -5'
30997 5' -58.6 NC_006560.1 + 104909 0.69 0.614558
Target:  5'- uUCCgaGGAgAuCCCGgGaGCCGCUCGUCGg -3'
miRNA:   3'- -AGG--UCUgU-GGGCaC-CGGCGAGUAGCa -5'
30997 5' -58.6 NC_006560.1 + 105781 0.68 0.674799
Target:  5'- cCCcGACGCCgcgaCGUGGCCGCUgG-CGg -3'
miRNA:   3'- aGGuCUGUGG----GCACCGGCGAgUaGCa -5'
30997 5' -58.6 NC_006560.1 + 107012 0.72 0.450626
Target:  5'- cCCGGGCcugcgaggGCCCGUcgcacaacgcgGaGCCGCUCGUCGUc -3'
miRNA:   3'- aGGUCUG--------UGGGCA-----------C-CGGCGAGUAGCA- -5'
30997 5' -58.6 NC_006560.1 + 107892 0.66 0.815995
Target:  5'- -gCGGGCgACCCGggUGGCCGCggccaAUCGc -3'
miRNA:   3'- agGUCUG-UGGGC--ACCGGCGag---UAGCa -5'
30997 5' -58.6 NC_006560.1 + 109034 0.67 0.762286
Target:  5'- gUCCAGgaACACCuCGUgcucgcccaccGGCCGCaCGUCGc -3'
miRNA:   3'- -AGGUC--UGUGG-GCA-----------CCGGCGaGUAGCa -5'
30997 5' -58.6 NC_006560.1 + 111537 0.66 0.807399
Target:  5'- -gCGGGCgGCCCGUGGacggagUGCUCGUCa- -3'
miRNA:   3'- agGUCUG-UGGGCACCg-----GCGAGUAGca -5'
30997 5' -58.6 NC_006560.1 + 115166 0.67 0.752895
Target:  5'- gCCAGGCcCCCGacacgcuggGGCUGCUCcuggCGUa -3'
miRNA:   3'- aGGUCUGuGGGCa--------CCGGCGAGua--GCA- -5'
30997 5' -58.6 NC_006560.1 + 115767 0.7 0.5945
Target:  5'- cCCgAGGCGCCCG-GGCCGCcgCAggaCGg -3'
miRNA:   3'- aGG-UCUGUGGGCaCCGGCGa-GUa--GCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.