miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30997 5' -58.6 NC_006560.1 + 120466 0.69 0.644722
Target:  5'- cUCGGcucCACCCGcgGGCCGCgCAUCGc -3'
miRNA:   3'- aGGUCu--GUGGGCa-CCGGCGaGUAGCa -5'
30997 5' -58.6 NC_006560.1 + 66247 0.68 0.664796
Target:  5'- cCCGGGCGCCCGaaGCacaGCUCggCGUc -3'
miRNA:   3'- aGGUCUGUGGGCacCGg--CGAGuaGCA- -5'
30997 5' -58.6 NC_006560.1 + 12799 0.68 0.664796
Target:  5'- --gAGGgACCCGUcggccgggGGCCGCUCGUCc- -3'
miRNA:   3'- aggUCUgUGGGCA--------CCGGCGAGUAGca -5'
30997 5' -58.6 NC_006560.1 + 105781 0.68 0.674799
Target:  5'- cCCcGACGCCgcgaCGUGGCCGCUgG-CGg -3'
miRNA:   3'- aGGuCUGUGG----GCACCGGCGAgUaGCa -5'
30997 5' -58.6 NC_006560.1 + 22174 0.68 0.714389
Target:  5'- cCCGGGCGCuguccccgCCGUcggGGCCGC-CGUCGc -3'
miRNA:   3'- aGGUCUGUG--------GGCA---CCGGCGaGUAGCa -5'
30997 5' -58.6 NC_006560.1 + 34988 0.67 0.733812
Target:  5'- cCCGGGCGCCuCGgGGCCGCgggcCGg -3'
miRNA:   3'- aGGUCUGUGG-GCaCCGGCGaguaGCa -5'
30997 5' -58.6 NC_006560.1 + 17177 0.67 0.7434
Target:  5'- aCCAGGCACgUGaGGCCGCcCAcCGg -3'
miRNA:   3'- aGGUCUGUGgGCaCCGGCGaGUaGCa -5'
30997 5' -58.6 NC_006560.1 + 35912 0.67 0.75195
Target:  5'- cUCCGGGCuguCCGUuucacgcGGCCGCUC-UCGc -3'
miRNA:   3'- -AGGUCUGug-GGCA-------CCGGCGAGuAGCa -5'
30997 5' -58.6 NC_006560.1 + 115166 0.67 0.752895
Target:  5'- gCCAGGCcCCCGacacgcuggGGCUGCUCcuggCGUa -3'
miRNA:   3'- aGGUCUGuGGGCa--------CCGGCGAGua--GCA- -5'
30997 5' -58.6 NC_006560.1 + 89753 0.67 0.762286
Target:  5'- uUCgAGGCcaaCGUGGCCGUcgUCGUCGg -3'
miRNA:   3'- -AGgUCUGuggGCACCGGCG--AGUAGCa -5'
30997 5' -58.6 NC_006560.1 + 109034 0.67 0.762286
Target:  5'- gUCCAGgaACACCuCGUgcucgcccaccGGCCGCaCGUCGc -3'
miRNA:   3'- -AGGUC--UGUGG-GCA-----------CCGGCGaGUAGCa -5'
30997 5' -58.6 NC_006560.1 + 11503 0.67 0.771566
Target:  5'- cUCGGGCGCCgGggaGG-CGCUCGUCGc -3'
miRNA:   3'- aGGUCUGUGGgCa--CCgGCGAGUAGCa -5'
30997 5' -58.6 NC_006560.1 + 83022 0.67 0.771566
Target:  5'- cCCAGuGCGCCgccggcaucuuCGUGGCCGCguUCGaguUCGUg -3'
miRNA:   3'- aGGUC-UGUGG-----------GCACCGGCG--AGU---AGCA- -5'
30997 5' -58.6 NC_006560.1 + 42127 0.66 0.777991
Target:  5'- cCCGGACGCcagcgccucggcguCCG-GGUCGCcgUCGUCGUc -3'
miRNA:   3'- aGGUCUGUG--------------GGCaCCGGCG--AGUAGCA- -5'
30997 5' -58.6 NC_006560.1 + 4999 0.66 0.779815
Target:  5'- gCCGGGggcggggUGCCCGUcGCCGC-CGUCGUc -3'
miRNA:   3'- aGGUCU-------GUGGGCAcCGGCGaGUAGCA- -5'
30997 5' -58.6 NC_006560.1 + 76967 0.66 0.780726
Target:  5'- gCC-GACGCCCuGggccGGCUGCUgGUCGa -3'
miRNA:   3'- aGGuCUGUGGG-Ca---CCGGCGAgUAGCa -5'
30997 5' -58.6 NC_006560.1 + 80052 0.66 0.798651
Target:  5'- cCCGGACACCCGggcGGUCGgaCGccccccUCGc -3'
miRNA:   3'- aGGUCUGUGGGCa--CCGGCgaGU------AGCa -5'
30997 5' -58.6 NC_006560.1 + 78110 0.66 0.798651
Target:  5'- cCCGGGCGCUgGUGGCgG-UCAgCGUg -3'
miRNA:   3'- aGGUCUGUGGgCACCGgCgAGUaGCA- -5'
30997 5' -58.6 NC_006560.1 + 111537 0.66 0.807399
Target:  5'- -gCGGGCgGCCCGUGGacggagUGCUCGUCa- -3'
miRNA:   3'- agGUCUG-UGGGCACCg-----GCGAGUAGca -5'
30997 5' -58.6 NC_006560.1 + 71849 0.66 0.807399
Target:  5'- gCgGGGCcuggGCCCGgcGGCCGCU-GUCGUa -3'
miRNA:   3'- aGgUCUG----UGGGCa-CCGGCGAgUAGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.