miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30997 5' -58.6 NC_006560.1 + 35912 0.67 0.75195
Target:  5'- cUCCGGGCuguCCGUuucacgcGGCCGCUC-UCGc -3'
miRNA:   3'- -AGGUCUGug-GGCA-------CCGGCGAGuAGCa -5'
30997 5' -58.6 NC_006560.1 + 17177 0.67 0.7434
Target:  5'- aCCAGGCACgUGaGGCCGCcCAcCGg -3'
miRNA:   3'- aGGUCUGUGgGCaCCGGCGaGUaGCa -5'
30997 5' -58.6 NC_006560.1 + 34988 0.67 0.733812
Target:  5'- cCCGGGCGCCuCGgGGCCGCgggcCGg -3'
miRNA:   3'- aGGUCUGUGG-GCaCCGGCGaguaGCa -5'
30997 5' -58.6 NC_006560.1 + 22174 0.68 0.714389
Target:  5'- cCCGGGCGCuguccccgCCGUcggGGCCGC-CGUCGc -3'
miRNA:   3'- aGGUCUGUG--------GGCA---CCGGCGaGUAGCa -5'
30997 5' -58.6 NC_006560.1 + 105781 0.68 0.674799
Target:  5'- cCCcGACGCCgcgaCGUGGCCGCUgG-CGg -3'
miRNA:   3'- aGGuCUGUGG----GCACCGGCGAgUaGCa -5'
30997 5' -58.6 NC_006560.1 + 12799 0.68 0.664796
Target:  5'- --gAGGgACCCGUcggccgggGGCCGCUCGUCc- -3'
miRNA:   3'- aggUCUgUGGGCA--------CCGGCGAGUAGca -5'
30997 5' -58.6 NC_006560.1 + 66247 0.68 0.664796
Target:  5'- cCCGGGCGCCCGaaGCacaGCUCggCGUc -3'
miRNA:   3'- aGGUCUGUGGGCacCGg--CGAGuaGCA- -5'
30997 5' -58.6 NC_006560.1 + 120466 0.69 0.644722
Target:  5'- cUCGGcucCACCCGcgGGCCGCgCAUCGc -3'
miRNA:   3'- aGGUCu--GUGGGCa-CCGGCGaGUAGCa -5'
30997 5' -58.6 NC_006560.1 + 138249 0.69 0.634667
Target:  5'- -gCAGACGCCCGUGGgCCuGCUgGUg-- -3'
miRNA:   3'- agGUCUGUGGGCACC-GG-CGAgUAgca -5'
30997 5' -58.6 NC_006560.1 + 3874 0.69 0.62461
Target:  5'- gCCAGGCACuCCGcGGCgGCgucggcggCGUCGg -3'
miRNA:   3'- aGGUCUGUG-GGCaCCGgCGa-------GUAGCa -5'
30997 5' -58.6 NC_006560.1 + 104909 0.69 0.614558
Target:  5'- uUCCgaGGAgAuCCCGgGaGCCGCUCGUCGg -3'
miRNA:   3'- -AGG--UCUgU-GGGCaC-CGGCGAGUAGCa -5'
30997 5' -58.6 NC_006560.1 + 37690 0.69 0.604519
Target:  5'- gCCGGGCGCCg--GGCCGCUC-UUGa -3'
miRNA:   3'- aGGUCUGUGGgcaCCGGCGAGuAGCa -5'
30997 5' -58.6 NC_006560.1 + 115767 0.7 0.5945
Target:  5'- cCCgAGGCGCCCG-GGCCGCcgCAggaCGg -3'
miRNA:   3'- aGG-UCUGUGGGCaCCGGCGa-GUa--GCa -5'
30997 5' -58.6 NC_006560.1 + 115870 0.7 0.584508
Target:  5'- cCCuGGCGCCCGUGGCCcgggugugcacGUUCGaCGg -3'
miRNA:   3'- aGGuCUGUGGGCACCGG-----------CGAGUaGCa -5'
30997 5' -58.6 NC_006560.1 + 669 0.7 0.574549
Target:  5'- cCCGGcGCGCCCGcGGCgcggGCUCGUCGc -3'
miRNA:   3'- aGGUC-UGUGGGCaCCGg---CGAGUAGCa -5'
30997 5' -58.6 NC_006560.1 + 128737 0.7 0.574549
Target:  5'- gUCguGGCGCCCGcGGCCGCUgGcccgcccaguucUCGg -3'
miRNA:   3'- -AGguCUGUGGGCaCCGGCGAgU------------AGCa -5'
30997 5' -58.6 NC_006560.1 + 14220 0.7 0.544932
Target:  5'- gCgGGGCGCCCGcGGUCGCggggaUCGUCGa -3'
miRNA:   3'- aGgUCUGUGGGCaCCGGCG-----AGUAGCa -5'
30997 5' -58.6 NC_006560.1 + 40096 0.71 0.539065
Target:  5'- gCgGGGCGCCCG-GGCCGCcgggcggagacucgCGUCGUc -3'
miRNA:   3'- aGgUCUGUGGGCaCCGGCGa-------------GUAGCA- -5'
30997 5' -58.6 NC_006560.1 + 139258 0.71 0.506262
Target:  5'- cCCGGACcCCCGggGGCgCGCggUCGUCGg -3'
miRNA:   3'- aGGUCUGuGGGCa-CCG-GCG--AGUAGCa -5'
30997 5' -58.6 NC_006560.1 + 20396 0.72 0.487367
Target:  5'- cCCGcGCACCCG-GGaCCGCUgGUCGg -3'
miRNA:   3'- aGGUcUGUGGGCaCC-GGCGAgUAGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.