Results 1 - 20 of 563 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30999 | 3' | -68.8 | NC_006560.1 | + | 22384 | 0.65 | 0.426219 |
Target: 5'- aCCCCgCCCCCGgcucggaCCCCGgcucggaGGCgucggacucgGACCCc -3' miRNA: 3'- gGGGGaGGGGGC-------GGGGCg------CCG----------CUGGG- -5' |
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30999 | 3' | -68.8 | NC_006560.1 | + | 10945 | 0.65 | 0.426219 |
Target: 5'- gCCCCCgcgCCagCCGCCCuaCGCcGCGcguuccgccccccGCCCa -3' miRNA: 3'- -GGGGGa--GGg-GGCGGG--GCGcCGC-------------UGGG- -5' |
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30999 | 3' | -68.8 | NC_006560.1 | + | 42540 | 0.65 | 0.426219 |
Target: 5'- gCCCCagcgCCCCgggguCGCgCggggaggcgcccgCCGCGGCGGCCa -3' miRNA: 3'- gGGGGa---GGGG-----GCG-G-------------GGCGCCGCUGGg -5' |
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30999 | 3' | -68.8 | NC_006560.1 | + | 124615 | 0.65 | 0.424618 |
Target: 5'- gCCCCgggggCCgugcuuCUCGCCCCgGUGGCugaagaacaacgacGACCCg -3' miRNA: 3'- gGGGGa----GG------GGGCGGGG-CGCCG--------------CUGGG- -5' |
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30999 | 3' | -68.8 | NC_006560.1 | + | 72506 | 0.66 | 0.419041 |
Target: 5'- aCCCCCucggguUCCCUaagCGCCgCCGCc-CGACCUg -3' miRNA: 3'- -GGGGG------AGGGG---GCGG-GGCGccGCUGGG- -5' |
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30999 | 3' | -68.8 | NC_006560.1 | + | 5534 | 0.66 | 0.419041 |
Target: 5'- uCgCgCUCUUCCGuCCCCcCGGCcgGACCCg -3' miRNA: 3'- -GgGgGAGGGGGC-GGGGcGCCG--CUGGG- -5' |
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30999 | 3' | -68.8 | NC_006560.1 | + | 79767 | 0.66 | 0.419041 |
Target: 5'- aCCCCCgccgCCCCaccgaaGCCCCcucuCGaGuCGACUCu -3' miRNA: 3'- -GGGGGa---GGGGg-----CGGGGc---GC-C-GCUGGG- -5' |
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30999 | 3' | -68.8 | NC_006560.1 | + | 30556 | 0.66 | 0.419041 |
Target: 5'- gCCCCgaggcggCgCCgcggcgcgcgCGCCUCGCGccGCGGCCCg -3' miRNA: 3'- gGGGGa------GgGG----------GCGGGGCGC--CGCUGGG- -5' |
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30999 | 3' | -68.8 | NC_006560.1 | + | 108600 | 0.66 | 0.419041 |
Target: 5'- gCgCUUggcgCCgCgCGCgCCCGCGaGCGACCCg -3' miRNA: 3'- -GgGGGa---GGgG-GCG-GGGCGC-CGCUGGG- -5' |
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30999 | 3' | -68.8 | NC_006560.1 | + | 46071 | 0.66 | 0.419041 |
Target: 5'- cCCgCCCgacggCCCa-GCCCgagGCGGCGccGCCCg -3' miRNA: 3'- -GG-GGGa----GGGggCGGGg--CGCCGC--UGGG- -5' |
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30999 | 3' | -68.8 | NC_006560.1 | + | 53858 | 0.66 | 0.419041 |
Target: 5'- aCCCgcgCCUCgCCgaCGCCCCGgaCGaCGACCCc -3' miRNA: 3'- -GGG---GGAG-GGg-GCGGGGC--GCcGCUGGG- -5' |
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30999 | 3' | -68.8 | NC_006560.1 | + | 81786 | 0.66 | 0.419041 |
Target: 5'- cCCCCCggcgCCCCCGC---GgGGCGcgaaaagaaGCCCu -3' miRNA: 3'- -GGGGGa---GGGGGCGgggCgCCGC---------UGGG- -5' |
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30999 | 3' | -68.8 | NC_006560.1 | + | 141172 | 0.66 | 0.419041 |
Target: 5'- cCCCCCUCCCCCuCCCC-CcucccCCCu -3' miRNA: 3'- -GGGGGAGGGGGcGGGGcGccgcuGGG- -5' |
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30999 | 3' | -68.8 | NC_006560.1 | + | 141250 | 0.66 | 0.419041 |
Target: 5'- cCCCCCUCCCCCuCCCC-CuccccCCCu -3' miRNA: 3'- -GGGGGAGGGGGcGGGGcGccgcuGGG- -5' |
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30999 | 3' | -68.8 | NC_006560.1 | + | 35109 | 0.66 | 0.418248 |
Target: 5'- cCCCCCaugggUCCgggccggggUCCGCUCgGgagaggcCGGCGGCCCg -3' miRNA: 3'- -GGGGG-----AGG---------GGGCGGGgC-------GCCGCUGGG- -5' |
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30999 | 3' | -68.8 | NC_006560.1 | + | 19539 | 0.66 | 0.418248 |
Target: 5'- gCCCggggcguUCUCCUCCGgcggccCCCCGgaGGCGGCaCCg -3' miRNA: 3'- -GGG-------GGAGGGGGC------GGGGCg-CCGCUG-GG- -5' |
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30999 | 3' | -68.8 | NC_006560.1 | + | 52437 | 0.66 | 0.418248 |
Target: 5'- aCUCCgUCCCCgagaGCCUgguCGUggacggcauaacgGGCGACCCc -3' miRNA: 3'- -GGGGgAGGGGg---CGGG---GCG-------------CCGCUGGG- -5' |
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30999 | 3' | -68.8 | NC_006560.1 | + | 47395 | 0.66 | 0.417455 |
Target: 5'- gCCCCCUggacCCCCCGCgUCGCcggguucaacaaGCGcACCUu -3' miRNA: 3'- -GGGGGA----GGGGGCGgGGCGc-----------CGC-UGGG- -5' |
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30999 | 3' | -68.8 | NC_006560.1 | + | 13633 | 0.66 | 0.417455 |
Target: 5'- uCCgCCgccacguaggcgCCCCCGCCCgccgagacgcaCGCGagcGCGACCg -3' miRNA: 3'- -GGgGGa-----------GGGGGCGGG-----------GCGC---CGCUGGg -5' |
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30999 | 3' | -68.8 | NC_006560.1 | + | 35418 | 0.66 | 0.416664 |
Target: 5'- gCCgCgCCCgCCGCCuuuuaucccgguugCCGgGGCGACCg -3' miRNA: 3'- gGGgGaGGG-GGCGG--------------GGCgCCGCUGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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