miRNA display CGI


Results 1 - 20 of 563 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30999 3' -68.8 NC_006560.1 + 42540 0.65 0.426219
Target:  5'- gCCCCagcgCCCCgggguCGCgCggggaggcgcccgCCGCGGCGGCCa -3'
miRNA:   3'- gGGGGa---GGGG-----GCG-G-------------GGCGCCGCUGGg -5'
30999 3' -68.8 NC_006560.1 + 22384 0.65 0.426219
Target:  5'- aCCCCgCCCCCGgcucggaCCCCGgcucggaGGCgucggacucgGACCCc -3'
miRNA:   3'- gGGGGaGGGGGC-------GGGGCg------CCG----------CUGGG- -5'
30999 3' -68.8 NC_006560.1 + 10945 0.65 0.426219
Target:  5'- gCCCCCgcgCCagCCGCCCuaCGCcGCGcguuccgccccccGCCCa -3'
miRNA:   3'- -GGGGGa--GGg-GGCGGG--GCGcCGC-------------UGGG- -5'
30999 3' -68.8 NC_006560.1 + 124615 0.65 0.424618
Target:  5'- gCCCCgggggCCgugcuuCUCGCCCCgGUGGCugaagaacaacgacGACCCg -3'
miRNA:   3'- gGGGGa----GG------GGGCGGGG-CGCCG--------------CUGGG- -5'
30999 3' -68.8 NC_006560.1 + 5534 0.66 0.419041
Target:  5'- uCgCgCUCUUCCGuCCCCcCGGCcgGACCCg -3'
miRNA:   3'- -GgGgGAGGGGGC-GGGGcGCCG--CUGGG- -5'
30999 3' -68.8 NC_006560.1 + 79767 0.66 0.419041
Target:  5'- aCCCCCgccgCCCCaccgaaGCCCCcucuCGaGuCGACUCu -3'
miRNA:   3'- -GGGGGa---GGGGg-----CGGGGc---GC-C-GCUGGG- -5'
30999 3' -68.8 NC_006560.1 + 30556 0.66 0.419041
Target:  5'- gCCCCgaggcggCgCCgcggcgcgcgCGCCUCGCGccGCGGCCCg -3'
miRNA:   3'- gGGGGa------GgGG----------GCGGGGCGC--CGCUGGG- -5'
30999 3' -68.8 NC_006560.1 + 72506 0.66 0.419041
Target:  5'- aCCCCCucggguUCCCUaagCGCCgCCGCc-CGACCUg -3'
miRNA:   3'- -GGGGG------AGGGG---GCGG-GGCGccGCUGGG- -5'
30999 3' -68.8 NC_006560.1 + 108600 0.66 0.419041
Target:  5'- gCgCUUggcgCCgCgCGCgCCCGCGaGCGACCCg -3'
miRNA:   3'- -GgGGGa---GGgG-GCG-GGGCGC-CGCUGGG- -5'
30999 3' -68.8 NC_006560.1 + 46071 0.66 0.419041
Target:  5'- cCCgCCCgacggCCCa-GCCCgagGCGGCGccGCCCg -3'
miRNA:   3'- -GG-GGGa----GGGggCGGGg--CGCCGC--UGGG- -5'
30999 3' -68.8 NC_006560.1 + 53858 0.66 0.419041
Target:  5'- aCCCgcgCCUCgCCgaCGCCCCGgaCGaCGACCCc -3'
miRNA:   3'- -GGG---GGAG-GGg-GCGGGGC--GCcGCUGGG- -5'
30999 3' -68.8 NC_006560.1 + 81786 0.66 0.419041
Target:  5'- cCCCCCggcgCCCCCGC---GgGGCGcgaaaagaaGCCCu -3'
miRNA:   3'- -GGGGGa---GGGGGCGgggCgCCGC---------UGGG- -5'
30999 3' -68.8 NC_006560.1 + 141172 0.66 0.419041
Target:  5'- cCCCCCUCCCCCuCCCC-CcucccCCCu -3'
miRNA:   3'- -GGGGGAGGGGGcGGGGcGccgcuGGG- -5'
30999 3' -68.8 NC_006560.1 + 141250 0.66 0.419041
Target:  5'- cCCCCCUCCCCCuCCCC-CuccccCCCu -3'
miRNA:   3'- -GGGGGAGGGGGcGGGGcGccgcuGGG- -5'
30999 3' -68.8 NC_006560.1 + 52437 0.66 0.418248
Target:  5'- aCUCCgUCCCCgagaGCCUgguCGUggacggcauaacgGGCGACCCc -3'
miRNA:   3'- -GGGGgAGGGGg---CGGG---GCG-------------CCGCUGGG- -5'
30999 3' -68.8 NC_006560.1 + 19539 0.66 0.418248
Target:  5'- gCCCggggcguUCUCCUCCGgcggccCCCCGgaGGCGGCaCCg -3'
miRNA:   3'- -GGG-------GGAGGGGGC------GGGGCg-CCGCUG-GG- -5'
30999 3' -68.8 NC_006560.1 + 35109 0.66 0.418248
Target:  5'- cCCCCCaugggUCCgggccggggUCCGCUCgGgagaggcCGGCGGCCCg -3'
miRNA:   3'- -GGGGG-----AGG---------GGGCGGGgC-------GCCGCUGGG- -5'
30999 3' -68.8 NC_006560.1 + 47395 0.66 0.417455
Target:  5'- gCCCCCUggacCCCCCGCgUCGCcggguucaacaaGCGcACCUu -3'
miRNA:   3'- -GGGGGA----GGGGGCGgGGCGc-----------CGC-UGGG- -5'
30999 3' -68.8 NC_006560.1 + 13633 0.66 0.417455
Target:  5'- uCCgCCgccacguaggcgCCCCCGCCCgccgagacgcaCGCGagcGCGACCg -3'
miRNA:   3'- -GGgGGa-----------GGGGGCGGG-----------GCGC---CGCUGGg -5'
30999 3' -68.8 NC_006560.1 + 35418 0.66 0.416664
Target:  5'- gCCgCgCCCgCCGCCuuuuaucccgguugCCGgGGCGACCg -3'
miRNA:   3'- gGGgGaGGG-GGCGG--------------GGCgCCGCUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.