miRNA display CGI


Results 41 - 60 of 306 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30999 5' -49 NC_006560.1 + 11334 0.74 0.899493
Target:  5'- uCGGGGCGacCGGCGAGGgGGggcgGUAGAUGCg -3'
miRNA:   3'- -GCUCUGC--GUCGCUCUgCU----UAUUUGCG- -5'
30999 5' -49 NC_006560.1 + 2490 0.74 0.906038
Target:  5'- aGAGGCGC-GCGcAGGCGGccucGACGCg -3'
miRNA:   3'- gCUCUGCGuCGC-UCUGCUuau-UUGCG- -5'
30999 5' -49 NC_006560.1 + 30530 0.74 0.906038
Target:  5'- gGGGGCGgGGgGAGAgGGAgggAGGCGCc -3'
miRNA:   3'- gCUCUGCgUCgCUCUgCUUa--UUUGCG- -5'
30999 5' -49 NC_006560.1 + 54139 0.73 0.911713
Target:  5'- -cGGGCGCccucgaccccaccGGCGAGGCGAAccuggccgcccUGAGCGCc -3'
miRNA:   3'- gcUCUGCG-------------UCGCUCUGCUU-----------AUUUGCG- -5'
30999 5' -49 NC_006560.1 + 85584 0.73 0.912331
Target:  5'- gGGGGCGCGGCGGGcgcggcguCGAGcucGCGCa -3'
miRNA:   3'- gCUCUGCGUCGCUCu-------GCUUauuUGCG- -5'
30999 5' -49 NC_006560.1 + 132200 0.73 0.912331
Target:  5'- gCGGGACGUccuGGcCGAGGCGGAggcgguguuGCGCg -3'
miRNA:   3'- -GCUCUGCG---UC-GCUCUGCUUauu------UGCG- -5'
30999 5' -49 NC_006560.1 + 20895 0.73 0.912331
Target:  5'- --cGGCGCGGCGuucccGGGCG-GUGGGCGCg -3'
miRNA:   3'- gcuCUGCGUCGC-----UCUGCuUAUUUGCG- -5'
30999 5' -49 NC_006560.1 + 26360 0.73 0.912331
Target:  5'- gGAGACG--GCGGGGCGGAgacGGCGCc -3'
miRNA:   3'- gCUCUGCguCGCUCUGCUUau-UUGCG- -5'
30999 5' -49 NC_006560.1 + 148955 0.73 0.912331
Target:  5'- --cGACGgGGCGGGACGcgguGGCGCg -3'
miRNA:   3'- gcuCUGCgUCGCUCUGCuuauUUGCG- -5'
30999 5' -49 NC_006560.1 + 31947 0.73 0.918368
Target:  5'- gCGGGGgGCGGCcGGGCGG--GGGCGCg -3'
miRNA:   3'- -GCUCUgCGUCGcUCUGCUuaUUUGCG- -5'
30999 5' -49 NC_006560.1 + 129640 0.73 0.918368
Target:  5'- gCGGGGcCGUgGGCGAGGCGGAgc-ACGCg -3'
miRNA:   3'- -GCUCU-GCG-UCGCUCUGCUUauuUGCG- -5'
30999 5' -49 NC_006560.1 + 83955 0.73 0.918368
Target:  5'- gGAGGCGCAGCccGACGAcgGcGgGCg -3'
miRNA:   3'- gCUCUGCGUCGcuCUGCUuaUuUgCG- -5'
30999 5' -49 NC_006560.1 + 76132 0.73 0.924148
Target:  5'- uCGGGGCGCuggAGCGcGugGAccAGACGCc -3'
miRNA:   3'- -GCUCUGCG---UCGCuCugCUuaUUUGCG- -5'
30999 5' -49 NC_006560.1 + 98603 0.73 0.924148
Target:  5'- --cGACGCGGUGAuGCGA--AAGCGCg -3'
miRNA:   3'- gcuCUGCGUCGCUcUGCUuaUUUGCG- -5'
30999 5' -49 NC_006560.1 + 5262 0.73 0.92967
Target:  5'- gCGAgGACGCGGCGGcggcGGCGAGgucGGCGUc -3'
miRNA:   3'- -GCU-CUGCGUCGCU----CUGCUUau-UUGCG- -5'
30999 5' -49 NC_006560.1 + 43909 0.73 0.931807
Target:  5'- gCGGGACGUcguccgcgcgcucgaAGCGgcAGACGAAcaugGGGCGCa -3'
miRNA:   3'- -GCUCUGCG---------------UCGC--UCUGCUUa---UUUGCG- -5'
30999 5' -49 NC_006560.1 + 40036 0.73 0.93442
Target:  5'- aGAGcguuguuauacgcGCGCGGCGGGGCGGGgacggggagggGAugGCg -3'
miRNA:   3'- gCUC-------------UGCGUCGCUCUGCUUa----------UUugCG- -5'
30999 5' -49 NC_006560.1 + 82795 0.73 0.934935
Target:  5'- gCGGGcGCGCGGgagGGGGCGGAggGGACGCg -3'
miRNA:   3'- -GCUC-UGCGUCg--CUCUGCUUa-UUUGCG- -5'
30999 5' -49 NC_006560.1 + 51626 0.73 0.934935
Target:  5'- -cGGGCGCGGCGAGccCGccGUGGGCGCc -3'
miRNA:   3'- gcUCUGCGUCGCUCu-GCu-UAUUUGCG- -5'
30999 5' -49 NC_006560.1 + 118506 0.73 0.934935
Target:  5'- gGAGugGCuggaccGCGGGugGGA--GGCGCu -3'
miRNA:   3'- gCUCugCGu-----CGCUCugCUUauUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.