miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31000 5' -57 NC_006560.1 + 72263 0.66 0.895189
Target:  5'- -cCCcCGGgaccGCGCGggGGGCGacgucgagaCCUCCg -3'
miRNA:   3'- gaGGaGCCa---UGCGCuaCUCGC---------GGAGG- -5'
31000 5' -57 NC_006560.1 + 39656 0.66 0.895189
Target:  5'- uCUCCgcUCGGgcCGCGGcc-GCGCC-CCg -3'
miRNA:   3'- -GAGG--AGCCauGCGCUacuCGCGGaGG- -5'
31000 5' -57 NC_006560.1 + 31279 0.66 0.895189
Target:  5'- gCUCCUCGGggcucCGCcgcuc-CGCCUCCg -3'
miRNA:   3'- -GAGGAGCCau---GCGcuacucGCGGAGG- -5'
31000 5' -57 NC_006560.1 + 16017 0.66 0.895189
Target:  5'- -aCCacCGGaGCGCGAcgGGGCGCCggcaCCc -3'
miRNA:   3'- gaGGa-GCCaUGCGCUa-CUCGCGGa---GG- -5'
31000 5' -57 NC_006560.1 + 45976 0.66 0.888601
Target:  5'- -aCCgagCGccACGCGGUaGGGCGCC-CCg -3'
miRNA:   3'- gaGGa--GCcaUGCGCUA-CUCGCGGaGG- -5'
31000 5' -57 NC_006560.1 + 66513 0.66 0.888601
Target:  5'- -gCCcCGGuagUugGCGGUGAcGUGCgUCCg -3'
miRNA:   3'- gaGGaGCC---AugCGCUACU-CGCGgAGG- -5'
31000 5' -57 NC_006560.1 + 42548 0.66 0.888601
Target:  5'- -gCCcCGGggucGCGCGggGAgGCGCCcgCCg -3'
miRNA:   3'- gaGGaGCCa---UGCGCuaCU-CGCGGa-GG- -5'
31000 5' -57 NC_006560.1 + 23673 0.66 0.88793
Target:  5'- -gCCU-GGUGCGCGAcgcgcUGAcgcucauGCGCCUgCg -3'
miRNA:   3'- gaGGAgCCAUGCGCU-----ACU-------CGCGGAgG- -5'
31000 5' -57 NC_006560.1 + 11228 0.66 0.881794
Target:  5'- -aCCgCGGUcUGCGAcGGGCGCCgcuuggCCc -3'
miRNA:   3'- gaGGaGCCAuGCGCUaCUCGCGGa-----GG- -5'
31000 5' -57 NC_006560.1 + 11147 0.66 0.881794
Target:  5'- -gCCcCGGggcgGCGCGgcGAGCGCgagagUUCCg -3'
miRNA:   3'- gaGGaGCCa---UGCGCuaCUCGCG-----GAGG- -5'
31000 5' -57 NC_006560.1 + 12878 0.66 0.881794
Target:  5'- -aCCUCGGgcgGgagcagggugcuCGUGGUcGGCGCCUUCg -3'
miRNA:   3'- gaGGAGCCa--U------------GCGCUAcUCGCGGAGG- -5'
31000 5' -57 NC_006560.1 + 44394 0.66 0.881794
Target:  5'- -cCCUCGG-AgGCGGagccGCGUCUCCg -3'
miRNA:   3'- gaGGAGCCaUgCGCUacu-CGCGGAGG- -5'
31000 5' -57 NC_006560.1 + 99631 0.66 0.875484
Target:  5'- gUCCgCGGcgauggcgccgaccaGCGCGgcGAucuGCGCCUCCa -3'
miRNA:   3'- gAGGaGCCa--------------UGCGCuaCU---CGCGGAGG- -5'
31000 5' -57 NC_006560.1 + 44236 0.66 0.874772
Target:  5'- cCUCCaccugCGGcccCGCGAgcGAG-GCCUCCg -3'
miRNA:   3'- -GAGGa----GCCau-GCGCUa-CUCgCGGAGG- -5'
31000 5' -57 NC_006560.1 + 52330 0.66 0.874772
Target:  5'- gCUCgUCGG--CGCGGccgUGGGCGCCcugcggcagcgcUCCg -3'
miRNA:   3'- -GAGgAGCCauGCGCU---ACUCGCGG------------AGG- -5'
31000 5' -57 NC_006560.1 + 51659 0.66 0.874772
Target:  5'- -cCCgcugCGGUACGCGu---GCGUgCUCCg -3'
miRNA:   3'- gaGGa---GCCAUGCGCuacuCGCG-GAGG- -5'
31000 5' -57 NC_006560.1 + 117962 0.66 0.86754
Target:  5'- aCUUCUgcCGGUACGUG-UG-GCGCCUg- -3'
miRNA:   3'- -GAGGA--GCCAUGCGCuACuCGCGGAgg -5'
31000 5' -57 NC_006560.1 + 79807 0.66 0.86754
Target:  5'- uCUCgaUGGgggGCGCGGUG-GCGCCg-- -3'
miRNA:   3'- -GAGgaGCCa--UGCGCUACuCGCGGagg -5'
31000 5' -57 NC_006560.1 + 46420 0.66 0.86754
Target:  5'- -aUCUCGGUAUgGCGucacUGGGCGUUUCUc -3'
miRNA:   3'- gaGGAGCCAUG-CGCu---ACUCGCGGAGG- -5'
31000 5' -57 NC_006560.1 + 39451 0.66 0.86754
Target:  5'- -gCCaCGGcgcUGCGCGGUcGGCGCCgCCg -3'
miRNA:   3'- gaGGaGCC---AUGCGCUAcUCGCGGaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.