Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31002 | 5' | -55.4 | NC_006560.1 | + | 10351 | 0.68 | 0.850015 |
Target: 5'- aCCACCCGACggGcCGCcgugGAGUUGG-GggCg -3' miRNA: 3'- -GGUGGGCUGa-C-GCG----UUCGACCaCaaG- -5' |
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31002 | 5' | -55.4 | NC_006560.1 | + | 19416 | 0.74 | 0.529043 |
Target: 5'- gUCGCCgCGGCgGCGCucggcuGAGCUGGUGUcCg -3' miRNA: 3'- -GGUGG-GCUGaCGCG------UUCGACCACAaG- -5' |
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31002 | 5' | -55.4 | NC_006560.1 | + | 21998 | 0.67 | 0.880219 |
Target: 5'- uCCGCUCGGCgGCGCGGGCUcgccGGa---- -3' miRNA: 3'- -GGUGGGCUGaCGCGUUCGA----CCacaag -5' |
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31002 | 5' | -55.4 | NC_006560.1 | + | 22950 | 0.66 | 0.918759 |
Target: 5'- cCCGcCCCGugUGgGCGcccgAGCUGGg---- -3' miRNA: 3'- -GGU-GGGCugACgCGU----UCGACCacaag -5' |
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31002 | 5' | -55.4 | NC_006560.1 | + | 23652 | 0.82 | 0.197181 |
Target: 5'- gCGCCUGGCUGCGCGAGCugcgccUGGUGcgCg -3' miRNA: 3'- gGUGGGCUGACGCGUUCG------ACCACaaG- -5' |
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31002 | 5' | -55.4 | NC_006560.1 | + | 24392 | 0.71 | 0.682116 |
Target: 5'- -aGCCCGAggacgUGCGCGuGCUGGUGcUCu -3' miRNA: 3'- ggUGGGCUg----ACGCGUuCGACCACaAG- -5' |
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31002 | 5' | -55.4 | NC_006560.1 | + | 25118 | 0.67 | 0.880219 |
Target: 5'- gCACCgCGcCUGCGCGcGCUGGg---- -3' miRNA: 3'- gGUGG-GCuGACGCGUuCGACCacaag -5' |
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31002 | 5' | -55.4 | NC_006560.1 | + | 32707 | 0.67 | 0.865542 |
Target: 5'- uCCGCCCGAgggcGCGCGGGCccggGGUccgUCg -3' miRNA: 3'- -GGUGGGCUga--CGCGUUCGa---CCAca-AG- -5' |
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31002 | 5' | -55.4 | NC_006560.1 | + | 49639 | 0.66 | 0.906856 |
Target: 5'- gCACCCGAUc-CGCG-GCcccGGUGUUCg -3' miRNA: 3'- gGUGGGCUGacGCGUuCGa--CCACAAG- -5' |
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31002 | 5' | -55.4 | NC_006560.1 | + | 50361 | 0.72 | 0.651363 |
Target: 5'- gCCAUCCGAuCUGUucGCGgccgAGCUGGcGUUCg -3' miRNA: 3'- -GGUGGGCU-GACG--CGU----UCGACCaCAAG- -5' |
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31002 | 5' | -55.4 | NC_006560.1 | + | 61460 | 0.67 | 0.87299 |
Target: 5'- gCACCCGcguacgcgguGCUGCgGCAcucaaagaAGUUGGUGUg- -3' miRNA: 3'- gGUGGGC----------UGACG-CGU--------UCGACCACAag -5' |
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31002 | 5' | -55.4 | NC_006560.1 | + | 68747 | 0.67 | 0.880219 |
Target: 5'- cUCACCCcGCUGaCGCGGGCcc-UGUUCa -3' miRNA: 3'- -GGUGGGcUGAC-GCGUUCGaccACAAG- -5' |
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31002 | 5' | -55.4 | NC_006560.1 | + | 69522 | 0.66 | 0.929697 |
Target: 5'- gCACCUGGCgagccugcgGCGgGcGCUGGUGg-- -3' miRNA: 3'- gGUGGGCUGa--------CGCgUuCGACCACaag -5' |
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31002 | 5' | -55.4 | NC_006560.1 | + | 71731 | 0.69 | 0.780508 |
Target: 5'- gUACCCGuCgggGCGCGGccugcGCUGcGUGUUCu -3' miRNA: 3'- gGUGGGCuGa--CGCGUU-----CGAC-CACAAG- -5' |
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31002 | 5' | -55.4 | NC_006560.1 | + | 73348 | 0.73 | 0.549034 |
Target: 5'- gCCGCCUGGCgcugGC-CAAGCUGGUucUCg -3' miRNA: 3'- -GGUGGGCUGa---CGcGUUCGACCAcaAG- -5' |
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31002 | 5' | -55.4 | NC_006560.1 | + | 74644 | 0.69 | 0.778642 |
Target: 5'- cCUGCCCGACgccGCGCAGGCcgcgcccccggaGGUGcgCg -3' miRNA: 3'- -GGUGGGCUGa--CGCGUUCGa-----------CCACaaG- -5' |
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31002 | 5' | -55.4 | NC_006560.1 | + | 76629 | 0.67 | 0.880219 |
Target: 5'- aCCGCCCuGCgGCGCucGCUGGa---- -3' miRNA: 3'- -GGUGGGcUGaCGCGuuCGACCacaag -5' |
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31002 | 5' | -55.4 | NC_006560.1 | + | 80845 | 0.69 | 0.798868 |
Target: 5'- gCGCCUaggGGCUGCGCGcgGGCUGGg---- -3' miRNA: 3'- gGUGGG---CUGACGCGU--UCGACCacaag -5' |
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31002 | 5' | -55.4 | NC_006560.1 | + | 84483 | 0.69 | 0.780508 |
Target: 5'- gCGCCCG-CgaGCGCGAGCgguaccgcgGcGUGUUCg -3' miRNA: 3'- gGUGGGCuGa-CGCGUUCGa--------C-CACAAG- -5' |
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31002 | 5' | -55.4 | NC_006560.1 | + | 90662 | 0.69 | 0.798868 |
Target: 5'- cCUACCUGGC-GCGCGccgccGGCcUGGUGggCg -3' miRNA: 3'- -GGUGGGCUGaCGCGU-----UCG-ACCACaaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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