miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31004 5' -60.5 NC_006560.1 + 128015 1.08 0.001263
Target:  5'- cGACCGUGGCCCAGCUCUACUCCCCGAc -3'
miRNA:   3'- -CUGGCACCGGGUCGAGAUGAGGGGCU- -5'
31004 5' -60.5 NC_006560.1 + 70107 0.76 0.215252
Target:  5'- -cCCGUGGCCCAGCU--GCcCCCCGu -3'
miRNA:   3'- cuGGCACCGGGUCGAgaUGaGGGGCu -5'
31004 5' -60.5 NC_006560.1 + 141564 0.76 0.225773
Target:  5'- cGCCGgcgGGCCCGGCUCga--CCCCGGc -3'
miRNA:   3'- cUGGCa--CCGGGUCGAGaugaGGGGCU- -5'
31004 5' -60.5 NC_006560.1 + 106248 0.74 0.291595
Target:  5'- aGACCGcccgGGCCCGcggcauGCUCcgGCUCUCCGAc -3'
miRNA:   3'- -CUGGCa---CCGGGU------CGAGa-UGAGGGGCU- -5'
31004 5' -60.5 NC_006560.1 + 119575 0.73 0.311976
Target:  5'- cGCCGgacagcgcccGGCCCcGCcCUGCUCCCCGGc -3'
miRNA:   3'- cUGGCa---------CCGGGuCGaGAUGAGGGGCU- -5'
31004 5' -60.5 NC_006560.1 + 116889 0.73 0.311976
Target:  5'- gGGCCGgucgucGGCCgccucgCGGCUCUGCcCCCCGAu -3'
miRNA:   3'- -CUGGCa-----CCGG------GUCGAGAUGaGGGGCU- -5'
31004 5' -60.5 NC_006560.1 + 125087 0.72 0.355925
Target:  5'- cGAUCGcccGGCCCGGCgugcgCUACUucgCCCCGGg -3'
miRNA:   3'- -CUGGCa--CCGGGUCGa----GAUGA---GGGGCU- -5'
31004 5' -60.5 NC_006560.1 + 31619 0.72 0.379478
Target:  5'- aGCCGcagugGGCCCGccGCUCccgcCUCCCCGAg -3'
miRNA:   3'- cUGGCa----CCGGGU--CGAGau--GAGGGGCU- -5'
31004 5' -60.5 NC_006560.1 + 46735 0.71 0.40155
Target:  5'- cGCCG-GGCCCGGUcgccuucgccguccUCcGCUCCCCGu -3'
miRNA:   3'- cUGGCaCCGGGUCG--------------AGaUGAGGGGCu -5'
31004 5' -60.5 NC_006560.1 + 64785 0.71 0.429608
Target:  5'- -uCCGcGGCCCGGCgCUccGCUCCCCc- -3'
miRNA:   3'- cuGGCaCCGGGUCGaGA--UGAGGGGcu -5'
31004 5' -60.5 NC_006560.1 + 106318 0.71 0.429608
Target:  5'- cGCC--GGCCUGGCUCUGCgcggCCCCGc -3'
miRNA:   3'- cUGGcaCCGGGUCGAGAUGa---GGGGCu -5'
31004 5' -60.5 NC_006560.1 + 145578 0.71 0.429608
Target:  5'- uGACCGgccccgGGCCCcGCUC-GCUgCCCCGc -3'
miRNA:   3'- -CUGGCa-----CCGGGuCGAGaUGA-GGGGCu -5'
31004 5' -60.5 NC_006560.1 + 114051 0.7 0.447164
Target:  5'- cGGCCGUGGCCaCGGCggccgUGCgcgcCCCCGu -3'
miRNA:   3'- -CUGGCACCGG-GUCGag---AUGa---GGGGCu -5'
31004 5' -60.5 NC_006560.1 + 137373 0.7 0.474225
Target:  5'- cGGCCGUGcacGCCCAGUUCgGCcUCCUGAa -3'
miRNA:   3'- -CUGGCAC---CGGGUCGAGaUGaGGGGCU- -5'
31004 5' -60.5 NC_006560.1 + 120452 0.69 0.502083
Target:  5'- aGGCCGUGGUgCuGCUCgGCUCCaCCc- -3'
miRNA:   3'- -CUGGCACCGgGuCGAGaUGAGG-GGcu -5'
31004 5' -60.5 NC_006560.1 + 149483 0.69 0.511528
Target:  5'- cGGCCGgcGGCCCgGGC-CgacGCUCCCCGc -3'
miRNA:   3'- -CUGGCa-CCGGG-UCGaGa--UGAGGGGCu -5'
31004 5' -60.5 NC_006560.1 + 73928 0.69 0.511528
Target:  5'- -cCCGUGGCgCAGCUCcuggAgUCCCUGc -3'
miRNA:   3'- cuGGCACCGgGUCGAGa---UgAGGGGCu -5'
31004 5' -60.5 NC_006560.1 + 95398 0.69 0.549991
Target:  5'- --aCGUGGaCCCGGCcCUGCUgCCCa- -3'
miRNA:   3'- cugGCACC-GGGUCGaGAUGAgGGGcu -5'
31004 5' -60.5 NC_006560.1 + 60968 0.69 0.549991
Target:  5'- cGCCGcggaGGCCguGgaCUgGCUCCCCGAg -3'
miRNA:   3'- cUGGCa---CCGGguCgaGA-UGAGGGGCU- -5'
31004 5' -60.5 NC_006560.1 + 29257 0.68 0.569561
Target:  5'- cGACCGUcGGCCCgcccgGGUUCU-CUCUCCu- -3'
miRNA:   3'- -CUGGCA-CCGGG-----UCGAGAuGAGGGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.