miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31004 5' -60.5 NC_006560.1 + 29257 0.68 0.569561
Target:  5'- cGACCGUcGGCCCgcccgGGUUCU-CUCUCCu- -3'
miRNA:   3'- -CUGGCA-CCGGG-----UCGAGAuGAGGGGcu -5'
31004 5' -60.5 NC_006560.1 + 31190 0.66 0.678782
Target:  5'- cGCCGgcccGCCCGGCgCaGCUCCCCc- -3'
miRNA:   3'- cUGGCac--CGGGUCGaGaUGAGGGGcu -5'
31004 5' -60.5 NC_006560.1 + 31619 0.72 0.379478
Target:  5'- aGCCGcagugGGCCCGccGCUCccgcCUCCCCGAg -3'
miRNA:   3'- cUGGCa----CCGGGU--CGAGau--GAGGGGCU- -5'
31004 5' -60.5 NC_006560.1 + 39803 0.66 0.708232
Target:  5'- aGGCC--GGCCCgGGCUCcGCgUCCUCGAa -3'
miRNA:   3'- -CUGGcaCCGGG-UCGAGaUG-AGGGGCU- -5'
31004 5' -60.5 NC_006560.1 + 45898 0.67 0.668881
Target:  5'- cACCGggGGCgaCCGGCggguCUCCCCGGg -3'
miRNA:   3'- cUGGCa-CCG--GGUCGagauGAGGGGCU- -5'
31004 5' -60.5 NC_006560.1 + 46735 0.71 0.40155
Target:  5'- cGCCG-GGCCCGGUcgccuucgccguccUCcGCUCCCCGu -3'
miRNA:   3'- cUGGCaCCGGGUCG--------------AGaUGAGGGGCu -5'
31004 5' -60.5 NC_006560.1 + 47480 0.67 0.658952
Target:  5'- uGGCaGcGGCCCAGCUCUGggacCUCuCCCa- -3'
miRNA:   3'- -CUGgCaCCGGGUCGAGAU----GAG-GGGcu -5'
31004 5' -60.5 NC_006560.1 + 50269 0.68 0.569561
Target:  5'- cGGCCG-GGCUCGGCgc-GC-CCCCGGg -3'
miRNA:   3'- -CUGGCaCCGGGUCGagaUGaGGGGCU- -5'
31004 5' -60.5 NC_006560.1 + 51805 0.68 0.599215
Target:  5'- gGACCGUGGCCCcGCgguucCUGCUggagcagUCCGAg -3'
miRNA:   3'- -CUGGCACCGGGuCGa----GAUGAg------GGGCU- -5'
31004 5' -60.5 NC_006560.1 + 52599 0.67 0.649003
Target:  5'- aGGCgGUGGCgaCgGGCgggCUGCggaUCCCCGAg -3'
miRNA:   3'- -CUGgCACCG--GgUCGa--GAUG---AGGGGCU- -5'
31004 5' -60.5 NC_006560.1 + 59868 0.68 0.609154
Target:  5'- gGGCCcugagGGCCCcGCgggCUGCUucaCCCCGAu -3'
miRNA:   3'- -CUGGca---CCGGGuCGa--GAUGA---GGGGCU- -5'
31004 5' -60.5 NC_006560.1 + 60968 0.69 0.549991
Target:  5'- cGCCGcggaGGCCguGgaCUgGCUCCCCGAg -3'
miRNA:   3'- cUGGCa---CCGGguCgaGA-UGAGGGGCU- -5'
31004 5' -60.5 NC_006560.1 + 61204 0.66 0.698465
Target:  5'- cGACCGU-GCCC-GCUC--CUCCCCc- -3'
miRNA:   3'- -CUGGCAcCGGGuCGAGauGAGGGGcu -5'
31004 5' -60.5 NC_006560.1 + 64785 0.71 0.429608
Target:  5'- -uCCGcGGCCCGGCgCUccGCUCCCCc- -3'
miRNA:   3'- cuGGCaCCGGGUCGaGA--UGAGGGGcu -5'
31004 5' -60.5 NC_006560.1 + 67211 0.68 0.569561
Target:  5'- gGACCGgGGCCCccuucgcgcgAGCUCgUGCcCCCCa- -3'
miRNA:   3'- -CUGGCaCCGGG----------UCGAG-AUGaGGGGcu -5'
31004 5' -60.5 NC_006560.1 + 68030 0.66 0.717938
Target:  5'- -cCCGacGGCCCgcugcaGGCUCUGCUgcgggCCCUGAc -3'
miRNA:   3'- cuGGCa-CCGGG------UCGAGAUGA-----GGGGCU- -5'
31004 5' -60.5 NC_006560.1 + 69120 0.67 0.649003
Target:  5'- cGCCG-GcGCCCAGCggcgcCUGCUCgCCCu- -3'
miRNA:   3'- cUGGCaC-CGGGUCGa----GAUGAG-GGGcu -5'
31004 5' -60.5 NC_006560.1 + 70107 0.76 0.215252
Target:  5'- -cCCGUGGCCCAGCU--GCcCCCCGu -3'
miRNA:   3'- cuGGCACCGGGUCGAgaUGaGGGGCu -5'
31004 5' -60.5 NC_006560.1 + 70722 0.66 0.708232
Target:  5'- cGGCgCGUGGCCgAGUUCguccgggaGCUCCaCGAc -3'
miRNA:   3'- -CUG-GCACCGGgUCGAGa-------UGAGGgGCU- -5'
31004 5' -60.5 NC_006560.1 + 71490 0.66 0.702379
Target:  5'- gGAUCGUGGUcaccggggcgaggaaCCAGUUC-GC-CCCCGAc -3'
miRNA:   3'- -CUGGCACCG---------------GGUCGAGaUGaGGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.