miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31004 5' -60.5 NC_006560.1 + 149483 0.69 0.511528
Target:  5'- cGGCCGgcGGCCCgGGC-CgacGCUCCCCGc -3'
miRNA:   3'- -CUGGCa-CCGGG-UCGaGa--UGAGGGGCu -5'
31004 5' -60.5 NC_006560.1 + 145578 0.71 0.429608
Target:  5'- uGACCGgccccgGGCCCcGCUC-GCUgCCCCGc -3'
miRNA:   3'- -CUGGCa-----CCGGGuCGAGaUGA-GGGGCu -5'
31004 5' -60.5 NC_006560.1 + 144879 0.66 0.676804
Target:  5'- --gCGUGGCCCugAGCgcccauguuCUCCCCGGc -3'
miRNA:   3'- cugGCACCGGG--UCGagau-----GAGGGGCU- -5'
31004 5' -60.5 NC_006560.1 + 142691 0.66 0.678782
Target:  5'- gGACCGgaggggGcGCCCGGCcggCcGCggCCCCGAg -3'
miRNA:   3'- -CUGGCa-----C-CGGGUCGa--GaUGa-GGGGCU- -5'
31004 5' -60.5 NC_006560.1 + 141564 0.76 0.225773
Target:  5'- cGCCGgcgGGCCCGGCUCga--CCCCGGc -3'
miRNA:   3'- cUGGCa--CCGGGUCGAGaugaGGGGCU- -5'
31004 5' -60.5 NC_006560.1 + 139185 0.66 0.688646
Target:  5'- uGCCGccGGCCCAGCUCg--UCCaCgGAg -3'
miRNA:   3'- cUGGCa-CCGGGUCGAGaugAGG-GgCU- -5'
31004 5' -60.5 NC_006560.1 + 137373 0.7 0.474225
Target:  5'- cGGCCGUGcacGCCCAGUUCgGCcUCCUGAa -3'
miRNA:   3'- -CUGGCAC---CGGGUCGAGaUGaGGGGCU- -5'
31004 5' -60.5 NC_006560.1 + 129049 0.66 0.727574
Target:  5'- -uCCG-GGCCCAGCggcccCUCCgCGAg -3'
miRNA:   3'- cuGGCaCCGGGUCGagau-GAGGgGCU- -5'
31004 5' -60.5 NC_006560.1 + 128015 1.08 0.001263
Target:  5'- cGACCGUGGCCCAGCUCUACUCCCCGAc -3'
miRNA:   3'- -CUGGCACCGGGUCGAGAUGAGGGGCU- -5'
31004 5' -60.5 NC_006560.1 + 125087 0.72 0.355925
Target:  5'- cGAUCGcccGGCCCGGCgugcgCUACUucgCCCCGGg -3'
miRNA:   3'- -CUGGCa--CCGGGUCGa----GAUGA---GGGGCU- -5'
31004 5' -60.5 NC_006560.1 + 122705 0.68 0.599215
Target:  5'- -cUCGUGGggguccaCCGGCUCUGCagCCCGGu -3'
miRNA:   3'- cuGGCACCg------GGUCGAGAUGagGGGCU- -5'
31004 5' -60.5 NC_006560.1 + 121934 0.68 0.609154
Target:  5'- gGACCGcgGGCCCgggcgcgcGGCUCUGCgccggCgCCUGGc -3'
miRNA:   3'- -CUGGCa-CCGGG--------UCGAGAUGa----G-GGGCU- -5'
31004 5' -60.5 NC_006560.1 + 120452 0.69 0.502083
Target:  5'- aGGCCGUGGUgCuGCUCgGCUCCaCCc- -3'
miRNA:   3'- -CUGGCACCGgGuCGAGaUGAGG-GGcu -5'
31004 5' -60.5 NC_006560.1 + 119575 0.73 0.311976
Target:  5'- cGCCGgacagcgcccGGCCCcGCcCUGCUCCCCGGc -3'
miRNA:   3'- cUGGCa---------CCGGGuCGaGAUGAGGGGCU- -5'
31004 5' -60.5 NC_006560.1 + 116889 0.73 0.311976
Target:  5'- gGGCCGgucgucGGCCgccucgCGGCUCUGCcCCCCGAu -3'
miRNA:   3'- -CUGGCa-----CCGG------GUCGAGAUGaGGGGCU- -5'
31004 5' -60.5 NC_006560.1 + 115878 0.67 0.649003
Target:  5'- -cCCGUGGCCCGGgUgUGCacguucgacggCCCCGc -3'
miRNA:   3'- cuGGCACCGGGUCgAgAUGa----------GGGGCu -5'
31004 5' -60.5 NC_006560.1 + 114051 0.7 0.447164
Target:  5'- cGGCCGUGGCCaCGGCggccgUGCgcgcCCCCGu -3'
miRNA:   3'- -CUGGCACCGG-GUCGag---AUGa---GGGGCu -5'
31004 5' -60.5 NC_006560.1 + 113825 0.66 0.727574
Target:  5'- -cCCGUGGCgcuguaccaCCAGCUgcggacgggcCUGCaCCCCGGg -3'
miRNA:   3'- cuGGCACCG---------GGUCGA----------GAUGaGGGGCU- -5'
31004 5' -60.5 NC_006560.1 + 108342 0.68 0.587319
Target:  5'- gGGCCGcggGGCaCCcucgcccccaaagAGCUuccaggcCUGCUCCCCGAa -3'
miRNA:   3'- -CUGGCa--CCG-GG-------------UCGA-------GAUGAGGGGCU- -5'
31004 5' -60.5 NC_006560.1 + 106582 0.66 0.727574
Target:  5'- gGGCCGgGGCCUGGC-Cg---CCCCGGu -3'
miRNA:   3'- -CUGGCaCCGGGUCGaGaugaGGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.