miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31004 5' -60.5 NC_006560.1 + 29257 0.68 0.569561
Target:  5'- cGACCGUcGGCCCgcccgGGUUCU-CUCUCCu- -3'
miRNA:   3'- -CUGGCA-CCGGG-----UCGAGAuGAGGGGcu -5'
31004 5' -60.5 NC_006560.1 + 50269 0.68 0.569561
Target:  5'- cGGCCG-GGCUCGGCgc-GC-CCCCGGg -3'
miRNA:   3'- -CUGGCaCCGGGUCGagaUGaGGGGCU- -5'
31004 5' -60.5 NC_006560.1 + 108342 0.68 0.587319
Target:  5'- gGGCCGcggGGCaCCcucgcccccaaagAGCUuccaggcCUGCUCCCCGAa -3'
miRNA:   3'- -CUGGCa--CCG-GG-------------UCGA-------GAUGAGGGGCU- -5'
31004 5' -60.5 NC_006560.1 + 122705 0.68 0.599215
Target:  5'- -cUCGUGGggguccaCCGGCUCUGCagCCCGGu -3'
miRNA:   3'- cuGGCACCg------GGUCGAGAUGagGGGCU- -5'
31004 5' -60.5 NC_006560.1 + 51805 0.68 0.599215
Target:  5'- gGACCGUGGCCCcGCgguucCUGCUggagcagUCCGAg -3'
miRNA:   3'- -CUGGCACCGGGuCGa----GAUGAg------GGGCU- -5'
31004 5' -60.5 NC_006560.1 + 104306 0.68 0.607164
Target:  5'- cGCC-UGGCCCAGCgccaucgCCCCGGg -3'
miRNA:   3'- cUGGcACCGGGUCGagauga-GGGGCU- -5'
31004 5' -60.5 NC_006560.1 + 59868 0.68 0.609154
Target:  5'- gGGCCcugagGGCCCcGCgggCUGCUucaCCCCGAu -3'
miRNA:   3'- -CUGGca---CCGGGuCGa--GAUGA---GGGGCU- -5'
31004 5' -60.5 NC_006560.1 + 121934 0.68 0.609154
Target:  5'- gGACCGcgGGCCCgggcgcgcGGCUCUGCgccggCgCCUGGc -3'
miRNA:   3'- -CUGGCa-CCGGG--------UCGAGAUGa----G-GGGCU- -5'
31004 5' -60.5 NC_006560.1 + 93711 0.67 0.619109
Target:  5'- cGACCGcGGCCCGGCagaaGCUCCUgGc -3'
miRNA:   3'- -CUGGCaCCGGGUCGaga-UGAGGGgCu -5'
31004 5' -60.5 NC_006560.1 + 73175 0.67 0.633061
Target:  5'- cGCCGgcgcgggggcggagGGCCCGGcCUCggccCUCCUCGAc -3'
miRNA:   3'- cUGGCa-------------CCGGGUC-GAGau--GAGGGGCU- -5'
31004 5' -60.5 NC_006560.1 + 115878 0.67 0.649003
Target:  5'- -cCCGUGGCCCGGgUgUGCacguucgacggCCCCGc -3'
miRNA:   3'- cuGGCACCGGGUCgAgAUGa----------GGGGCu -5'
31004 5' -60.5 NC_006560.1 + 69120 0.67 0.649003
Target:  5'- cGCCG-GcGCCCAGCggcgcCUGCUCgCCCu- -3'
miRNA:   3'- cUGGCaC-CGGGUCGa----GAUGAG-GGGcu -5'
31004 5' -60.5 NC_006560.1 + 52599 0.67 0.649003
Target:  5'- aGGCgGUGGCgaCgGGCgggCUGCggaUCCCCGAg -3'
miRNA:   3'- -CUGgCACCG--GgUCGa--GAUG---AGGGGCU- -5'
31004 5' -60.5 NC_006560.1 + 47480 0.67 0.658952
Target:  5'- uGGCaGcGGCCCAGCUCUGggacCUCuCCCa- -3'
miRNA:   3'- -CUGgCaCCGGGUCGAGAU----GAG-GGGcu -5'
31004 5' -60.5 NC_006560.1 + 104214 0.67 0.668881
Target:  5'- cGGCCGUgcugucguucgcGGCCCuGCU--GC-CCCCGAc -3'
miRNA:   3'- -CUGGCA------------CCGGGuCGAgaUGaGGGGCU- -5'
31004 5' -60.5 NC_006560.1 + 45898 0.67 0.668881
Target:  5'- cACCGggGGCgaCCGGCggguCUCCCCGGg -3'
miRNA:   3'- cUGGCa-CCG--GGUCGagauGAGGGGCU- -5'
31004 5' -60.5 NC_006560.1 + 144879 0.66 0.676804
Target:  5'- --gCGUGGCCCugAGCgcccauguuCUCCCCGGc -3'
miRNA:   3'- cugGCACCGGG--UCGagau-----GAGGGGCU- -5'
31004 5' -60.5 NC_006560.1 + 142691 0.66 0.678782
Target:  5'- gGACCGgaggggGcGCCCGGCcggCcGCggCCCCGAg -3'
miRNA:   3'- -CUGGCa-----C-CGGGUCGa--GaUGa-GGGGCU- -5'
31004 5' -60.5 NC_006560.1 + 31190 0.66 0.678782
Target:  5'- cGCCGgcccGCCCGGCgCaGCUCCCCc- -3'
miRNA:   3'- cUGGCac--CGGGUCGaGaUGAGGGGcu -5'
31004 5' -60.5 NC_006560.1 + 139185 0.66 0.688646
Target:  5'- uGCCGccGGCCCAGCUCg--UCCaCgGAg -3'
miRNA:   3'- cUGGCa-CCGGGUCGAGaugAGG-GgCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.