Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31004 | 5' | -60.5 | NC_006560.1 | + | 93711 | 0.67 | 0.619109 |
Target: 5'- cGACCGcGGCCCGGCagaaGCUCCUgGc -3' miRNA: 3'- -CUGGCaCCGGGUCGaga-UGAGGGgCu -5' |
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31004 | 5' | -60.5 | NC_006560.1 | + | 121934 | 0.68 | 0.609154 |
Target: 5'- gGACCGcgGGCCCgggcgcgcGGCUCUGCgccggCgCCUGGc -3' miRNA: 3'- -CUGGCa-CCGGG--------UCGAGAUGa----G-GGGCU- -5' |
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31004 | 5' | -60.5 | NC_006560.1 | + | 59868 | 0.68 | 0.609154 |
Target: 5'- gGGCCcugagGGCCCcGCgggCUGCUucaCCCCGAu -3' miRNA: 3'- -CUGGca---CCGGGuCGa--GAUGA---GGGGCU- -5' |
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31004 | 5' | -60.5 | NC_006560.1 | + | 104306 | 0.68 | 0.607164 |
Target: 5'- cGCC-UGGCCCAGCgccaucgCCCCGGg -3' miRNA: 3'- cUGGcACCGGGUCGagauga-GGGGCU- -5' |
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31004 | 5' | -60.5 | NC_006560.1 | + | 122705 | 0.68 | 0.599215 |
Target: 5'- -cUCGUGGggguccaCCGGCUCUGCagCCCGGu -3' miRNA: 3'- cuGGCACCg------GGUCGAGAUGagGGGCU- -5' |
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31004 | 5' | -60.5 | NC_006560.1 | + | 51805 | 0.68 | 0.599215 |
Target: 5'- gGACCGUGGCCCcGCgguucCUGCUggagcagUCCGAg -3' miRNA: 3'- -CUGGCACCGGGuCGa----GAUGAg------GGGCU- -5' |
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31004 | 5' | -60.5 | NC_006560.1 | + | 108342 | 0.68 | 0.587319 |
Target: 5'- gGGCCGcggGGCaCCcucgcccccaaagAGCUuccaggcCUGCUCCCCGAa -3' miRNA: 3'- -CUGGCa--CCG-GG-------------UCGA-------GAUGAGGGGCU- -5' |
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31004 | 5' | -60.5 | NC_006560.1 | + | 50269 | 0.68 | 0.569561 |
Target: 5'- cGGCCG-GGCUCGGCgc-GC-CCCCGGg -3' miRNA: 3'- -CUGGCaCCGGGUCGagaUGaGGGGCU- -5' |
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31004 | 5' | -60.5 | NC_006560.1 | + | 29257 | 0.68 | 0.569561 |
Target: 5'- cGACCGUcGGCCCgcccgGGUUCU-CUCUCCu- -3' miRNA: 3'- -CUGGCA-CCGGG-----UCGAGAuGAGGGGcu -5' |
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31004 | 5' | -60.5 | NC_006560.1 | + | 67211 | 0.68 | 0.569561 |
Target: 5'- gGACCGgGGCCCccuucgcgcgAGCUCgUGCcCCCCa- -3' miRNA: 3'- -CUGGCaCCGGG----------UCGAG-AUGaGGGGcu -5' |
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31004 | 5' | -60.5 | NC_006560.1 | + | 95398 | 0.69 | 0.549991 |
Target: 5'- --aCGUGGaCCCGGCcCUGCUgCCCa- -3' miRNA: 3'- cugGCACC-GGGUCGaGAUGAgGGGcu -5' |
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31004 | 5' | -60.5 | NC_006560.1 | + | 60968 | 0.69 | 0.549991 |
Target: 5'- cGCCGcggaGGCCguGgaCUgGCUCCCCGAg -3' miRNA: 3'- cUGGCa---CCGGguCgaGA-UGAGGGGCU- -5' |
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31004 | 5' | -60.5 | NC_006560.1 | + | 149483 | 0.69 | 0.511528 |
Target: 5'- cGGCCGgcGGCCCgGGC-CgacGCUCCCCGc -3' miRNA: 3'- -CUGGCa-CCGGG-UCGaGa--UGAGGGGCu -5' |
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31004 | 5' | -60.5 | NC_006560.1 | + | 73928 | 0.69 | 0.511528 |
Target: 5'- -cCCGUGGCgCAGCUCcuggAgUCCCUGc -3' miRNA: 3'- cuGGCACCGgGUCGAGa---UgAGGGGCu -5' |
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31004 | 5' | -60.5 | NC_006560.1 | + | 120452 | 0.69 | 0.502083 |
Target: 5'- aGGCCGUGGUgCuGCUCgGCUCCaCCc- -3' miRNA: 3'- -CUGGCACCGgGuCGAGaUGAGG-GGcu -5' |
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31004 | 5' | -60.5 | NC_006560.1 | + | 137373 | 0.7 | 0.474225 |
Target: 5'- cGGCCGUGcacGCCCAGUUCgGCcUCCUGAa -3' miRNA: 3'- -CUGGCAC---CGGGUCGAGaUGaGGGGCU- -5' |
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31004 | 5' | -60.5 | NC_006560.1 | + | 114051 | 0.7 | 0.447164 |
Target: 5'- cGGCCGUGGCCaCGGCggccgUGCgcgcCCCCGu -3' miRNA: 3'- -CUGGCACCGG-GUCGag---AUGa---GGGGCu -5' |
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31004 | 5' | -60.5 | NC_006560.1 | + | 145578 | 0.71 | 0.429608 |
Target: 5'- uGACCGgccccgGGCCCcGCUC-GCUgCCCCGc -3' miRNA: 3'- -CUGGCa-----CCGGGuCGAGaUGA-GGGGCu -5' |
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31004 | 5' | -60.5 | NC_006560.1 | + | 106318 | 0.71 | 0.429608 |
Target: 5'- cGCC--GGCCUGGCUCUGCgcggCCCCGc -3' miRNA: 3'- cUGGcaCCGGGUCGAGAUGa---GGGGCu -5' |
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31004 | 5' | -60.5 | NC_006560.1 | + | 64785 | 0.71 | 0.429608 |
Target: 5'- -uCCGcGGCCCGGCgCUccGCUCCCCc- -3' miRNA: 3'- cuGGCaCCGGGUCGaGA--UGAGGGGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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