miRNA display CGI


Results 41 - 60 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31006 3' -58.3 NC_006560.1 + 99825 0.69 0.65428
Target:  5'- cAGCUGGuuGUaguGGGCgG-CCGGGAUc -3'
miRNA:   3'- -UCGACCggCAgu-UCUGgUaGGCCCUG- -5'
31006 3' -58.3 NC_006560.1 + 26871 0.69 0.65428
Target:  5'- cGGCgcccgUGGCgGgagagCGAGACCGacgggggCCGGGACg -3'
miRNA:   3'- -UCG-----ACCGgCa----GUUCUGGUa------GGCCCUG- -5'
31006 3' -58.3 NC_006560.1 + 110323 0.69 0.65428
Target:  5'- uGGC-GGCCGcgCAGGAgaCGUuuGGGGCg -3'
miRNA:   3'- -UCGaCCGGCa-GUUCUg-GUAggCCCUG- -5'
31006 3' -58.3 NC_006560.1 + 106205 0.68 0.664386
Target:  5'- cGGCUGGCgG-CGAGGaucgccaCGUCCGGGcucGCg -3'
miRNA:   3'- -UCGACCGgCaGUUCUg------GUAGGCCC---UG- -5'
31006 3' -58.3 NC_006560.1 + 12040 0.68 0.664386
Target:  5'- gGGCacGCCGUCAgcuccucgacgaGGACCAcgCgGGGGCa -3'
miRNA:   3'- -UCGacCGGCAGU------------UCUGGUa-GgCCCUG- -5'
31006 3' -58.3 NC_006560.1 + 15777 0.68 0.674467
Target:  5'- gGGCccgggGGCCGgCAGGGCCcggcgCCGGcGGCg -3'
miRNA:   3'- -UCGa----CCGGCaGUUCUGGua---GGCC-CUG- -5'
31006 3' -58.3 NC_006560.1 + 42471 0.68 0.674467
Target:  5'- cGGCc-GCCGUCGGGGCgGUCgagGGGGCg -3'
miRNA:   3'- -UCGacCGGCAGUUCUGgUAGg--CCCUG- -5'
31006 3' -58.3 NC_006560.1 + 90272 0.68 0.684514
Target:  5'- gGGCccUGGCCcgccuccucuUCGAGGCCGUCgUGGGGCc -3'
miRNA:   3'- -UCG--ACCGGc---------AGUUCUGGUAG-GCCCUG- -5'
31006 3' -58.3 NC_006560.1 + 56137 0.68 0.692522
Target:  5'- gGGC--GCUGUCGuAGACCAgccuuccgccggCCGGGACg -3'
miRNA:   3'- -UCGacCGGCAGU-UCUGGUa-----------GGCCCUG- -5'
31006 3' -58.3 NC_006560.1 + 11127 0.68 0.694519
Target:  5'- gGGCUcagcGGgCGUCgAGGGCC--CCGGGGCg -3'
miRNA:   3'- -UCGA----CCgGCAG-UUCUGGuaGGCCCUG- -5'
31006 3' -58.3 NC_006560.1 + 44255 0.68 0.694519
Target:  5'- gAGCgaGGCC-UCcgcGGCCAUCCGGG-Cg -3'
miRNA:   3'- -UCGa-CCGGcAGuu-CUGGUAGGCCCuG- -5'
31006 3' -58.3 NC_006560.1 + 51155 0.68 0.704473
Target:  5'- cGC-GGCgCG-CGAGGCCGccuuUCUGGGGCg -3'
miRNA:   3'- uCGaCCG-GCaGUUCUGGU----AGGCCCUG- -5'
31006 3' -58.3 NC_006560.1 + 35515 0.68 0.714366
Target:  5'- cGgaGGCCGcgccucccaUUAGGGCCcgCgCGGGGCg -3'
miRNA:   3'- uCgaCCGGC---------AGUUCUGGuaG-GCCCUG- -5'
31006 3' -58.3 NC_006560.1 + 83848 0.67 0.724191
Target:  5'- uGGCUGGCCcugCGGcGCC-UCCGGGcCg -3'
miRNA:   3'- -UCGACCGGca-GUUcUGGuAGGCCCuG- -5'
31006 3' -58.3 NC_006560.1 + 148452 0.67 0.724191
Target:  5'- gGGCgGGCCGaCGG--UCGUCUGGGGCg -3'
miRNA:   3'- -UCGaCCGGCaGUUcuGGUAGGCCCUG- -5'
31006 3' -58.3 NC_006560.1 + 32071 0.67 0.743599
Target:  5'- gGGCaggGGCCG-CAGGGCgGgCgGGGGCg -3'
miRNA:   3'- -UCGa--CCGGCaGUUCUGgUaGgCCCUG- -5'
31006 3' -58.3 NC_006560.1 + 54919 0.67 0.743599
Target:  5'- aGGCgcucgggGGCCGgggcGGCCAUCguCGGGGCu -3'
miRNA:   3'- -UCGa------CCGGCaguuCUGGUAG--GCCCUG- -5'
31006 3' -58.3 NC_006560.1 + 76648 0.67 0.743599
Target:  5'- uGgaGGCCGcCGcGGCCGagUGGGACg -3'
miRNA:   3'- uCgaCCGGCaGUuCUGGUagGCCCUG- -5'
31006 3' -58.3 NC_006560.1 + 28947 0.67 0.753164
Target:  5'- uGGCgc-CCGUCGGGGCCGccccaaCGGGGCg -3'
miRNA:   3'- -UCGaccGGCAGUUCUGGUag----GCCCUG- -5'
31006 3' -58.3 NC_006560.1 + 39014 0.67 0.753164
Target:  5'- ---gGGCCca-GGGGCUGUCCGGGGCc -3'
miRNA:   3'- ucgaCCGGcagUUCUGGUAGGCCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.