miRNA display CGI


Results 41 - 60 of 510 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31008 3' -66 NC_006560.1 + 150059 0.74 0.123075
Target:  5'- cGGCGGccGCGCCccGCGCC-CGGCCGCGc- -3'
miRNA:   3'- -UCGUC--CGCGG--CGCGGuGCCGGCGCuu -5'
31008 3' -66 NC_006560.1 + 32934 0.74 0.123075
Target:  5'- gGGCAgGGgGCCGuCGCCGcCGGCgGCGAc -3'
miRNA:   3'- -UCGU-CCgCGGC-GCGGU-GCCGgCGCUu -5'
31008 3' -66 NC_006560.1 + 51793 0.74 0.123075
Target:  5'- cGGCGGGCGCCGgGaCCGUGGCCccGCGGu -3'
miRNA:   3'- -UCGUCCGCGGCgC-GGUGCCGG--CGCUu -5'
31008 3' -66 NC_006560.1 + 94950 0.74 0.123075
Target:  5'- gAGgAGGCGCUGCGCCGCGuGCUGgCGc- -3'
miRNA:   3'- -UCgUCCGCGGCGCGGUGC-CGGC-GCuu -5'
31008 3' -66 NC_006560.1 + 122907 0.74 0.123075
Target:  5'- cGUGGGCGacugcgcccuCCGCGCCGgGGCCGCGc- -3'
miRNA:   3'- uCGUCCGC----------GGCGCGGUgCCGGCGCuu -5'
31008 3' -66 NC_006560.1 + 75206 0.74 0.126157
Target:  5'- uGgAGGcCGCCGCGCgCGCGGUCGcCGAGg -3'
miRNA:   3'- uCgUCC-GCGGCGCG-GUGCCGGC-GCUU- -5'
31008 3' -66 NC_006560.1 + 42563 0.74 0.126157
Target:  5'- gGGgAGGCGCC-CGCCGCGGCgGCc-- -3'
miRNA:   3'- -UCgUCCGCGGcGCGGUGCCGgCGcuu -5'
31008 3' -66 NC_006560.1 + 128819 0.74 0.126157
Target:  5'- cGCGucGGCG-CGCGCCgacGCGGCCGCGGc -3'
miRNA:   3'- uCGU--CCGCgGCGCGG---UGCCGGCGCUu -5'
31008 3' -66 NC_006560.1 + 94502 0.74 0.129311
Target:  5'- cGGCGGGCgcgaGCCGCGagCGCGGCCccGCGGAc -3'
miRNA:   3'- -UCGUCCG----CGGCGCg-GUGCCGG--CGCUU- -5'
31008 3' -66 NC_006560.1 + 66016 0.74 0.129311
Target:  5'- cGCGGGuCGgC-CGCCAgGGCCGCGAGg -3'
miRNA:   3'- uCGUCC-GCgGcGCGGUgCCGGCGCUU- -5'
31008 3' -66 NC_006560.1 + 146470 0.74 0.129311
Target:  5'- gAGCGGGgGgCGgaGCgGCGGCCGCGAGc -3'
miRNA:   3'- -UCGUCCgCgGCg-CGgUGCCGGCGCUU- -5'
31008 3' -66 NC_006560.1 + 23395 0.74 0.130592
Target:  5'- cGCGGGCGUCGuCGCCgcgcagcgccgccugGCGGCCGCc-- -3'
miRNA:   3'- uCGUCCGCGGC-GCGG---------------UGCCGGCGcuu -5'
31008 3' -66 NC_006560.1 + 73675 0.74 0.132537
Target:  5'- cGguGGCGCgGCGCgGCGGCCcccugGCGGu -3'
miRNA:   3'- uCguCCGCGgCGCGgUGCCGG-----CGCUu -5'
31008 3' -66 NC_006560.1 + 108309 0.74 0.132537
Target:  5'- gAGCGGggucaGCGcCCGCGCCGCacccagaaagGGCCGCGGGg -3'
miRNA:   3'- -UCGUC-----CGC-GGCGCGGUG----------CCGGCGCUU- -5'
31008 3' -66 NC_006560.1 + 150148 0.74 0.132537
Target:  5'- cGGCGGGCGCgCGCGaCACggaaGGCCGCGc- -3'
miRNA:   3'- -UCGUCCGCG-GCGCgGUG----CCGGCGCuu -5'
31008 3' -66 NC_006560.1 + 3304 0.74 0.132537
Target:  5'- gGGCGGGCGgugaGCGCCGCGGgCCGgGGg -3'
miRNA:   3'- -UCGUCCGCgg--CGCGGUGCC-GGCgCUu -5'
31008 3' -66 NC_006560.1 + 41007 0.74 0.135837
Target:  5'- cGCGGGCGCCgagucguugcucGCGCCGacgGGCCGCa-- -3'
miRNA:   3'- uCGUCCGCGG------------CGCGGUg--CCGGCGcuu -5'
31008 3' -66 NC_006560.1 + 101939 0.74 0.135837
Target:  5'- cGCcgauGGCG-CGCGCCAgGGUCGCGAGg -3'
miRNA:   3'- uCGu---CCGCgGCGCGGUgCCGGCGCUU- -5'
31008 3' -66 NC_006560.1 + 117561 0.73 0.139213
Target:  5'- cGGCGGGCGgCGcCGCCGCcGCcCGCGAc -3'
miRNA:   3'- -UCGUCCGCgGC-GCGGUGcCG-GCGCUu -5'
31008 3' -66 NC_006560.1 + 5147 0.73 0.139213
Target:  5'- cGGCgcgGGGC-CCGgGCCGgGGCCGCGGGg -3'
miRNA:   3'- -UCG---UCCGcGGCgCGGUgCCGGCGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.