miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31008 5' -53.6 NC_006560.1 + 115210 0.66 0.968222
Target:  5'- cGCUuuccCGCGGUGAUCGcGcGGGCGcugCCCa -3'
miRNA:   3'- aCGA----GCGUCGUUAGCaC-UUCGCa--GGG- -5'
31008 5' -53.6 NC_006560.1 + 112615 0.66 0.965338
Target:  5'- cUGCUCcagGCGGCGAUCcacgGGAGCGagcacguguucugcgCCCu -3'
miRNA:   3'- -ACGAG---CGUCGUUAGca--CUUCGCa--------------GGG- -5'
31008 5' -53.6 NC_006560.1 + 107690 0.69 0.866377
Target:  5'- -aUUCGaggAGCGAUCGg--GGCGUCCCg -3'
miRNA:   3'- acGAGCg--UCGUUAGCacuUCGCAGGG- -5'
31008 5' -53.6 NC_006560.1 + 106233 0.66 0.957904
Target:  5'- gGCUCGC-GU--UCGUGGAGaccgCCCg -3'
miRNA:   3'- aCGAGCGuCGuuAGCACUUCgca-GGG- -5'
31008 5' -53.6 NC_006560.1 + 101620 0.69 0.858645
Target:  5'- cGCgagCGCGGUGAUgGUGuuuGCGguggCCCg -3'
miRNA:   3'- aCGa--GCGUCGUUAgCACuu-CGCa---GGG- -5'
31008 5' -53.6 NC_006560.1 + 101555 0.67 0.940883
Target:  5'- aGCU-GCAgGCGGUUGUcGAGGCgGUCCg -3'
miRNA:   3'- aCGAgCGU-CGUUAGCA-CUUCG-CAGGg -5'
31008 5' -53.6 NC_006560.1 + 100173 0.67 0.940883
Target:  5'- gGCgguggagaGCAGCGcgCGgguGAGCGUCUCg -3'
miRNA:   3'- aCGag------CGUCGUuaGCac-UUCGCAGGG- -5'
31008 5' -53.6 NC_006560.1 + 97373 0.66 0.957904
Target:  5'- aGCagaCGCGGCGGcCGgccgGggGCGaCCCc -3'
miRNA:   3'- aCGa--GCGUCGUUaGCa---CuuCGCaGGG- -5'
31008 5' -53.6 NC_006560.1 + 95952 0.67 0.925553
Target:  5'- aGCUCGCGGCcggCGggccGGAGuCGacgCCCg -3'
miRNA:   3'- aCGAGCGUCGuuaGCa---CUUC-GCa--GGG- -5'
31008 5' -53.6 NC_006560.1 + 95191 0.66 0.963999
Target:  5'- aGCagCGCGGCGAgcUCGaGAagaugcugcgggucAGCGUCCa -3'
miRNA:   3'- aCGa-GCGUCGUU--AGCaCU--------------UCGCAGGg -5'
31008 5' -53.6 NC_006560.1 + 93815 0.67 0.940883
Target:  5'- aGCUCGCGGCGc---UGAAGCucaacgCCCu -3'
miRNA:   3'- aCGAGCGUCGUuagcACUUCGca----GGG- -5'
31008 5' -53.6 NC_006560.1 + 93152 0.69 0.8507
Target:  5'- cGCUCuagGGCGccgCGUGucGCGUCCCc -3'
miRNA:   3'- aCGAGcg-UCGUua-GCACuuCGCAGGG- -5'
31008 5' -53.6 NC_006560.1 + 92977 0.66 0.968222
Target:  5'- gGCggCGCGGacGUCGggGAGGCGUUCg -3'
miRNA:   3'- aCGa-GCGUCguUAGCa-CUUCGCAGGg -5'
31008 5' -53.6 NC_006560.1 + 91327 0.68 0.895063
Target:  5'- aGCUCGagaaccuGCAGUaCGUGGacccGGCGgugCCCa -3'
miRNA:   3'- aCGAGCgu-----CGUUA-GCACU----UCGCa--GGG- -5'
31008 5' -53.6 NC_006560.1 + 88188 0.75 0.576809
Target:  5'- cGCUCGCAGaGGUCGcggGggGCGcggcagCCCa -3'
miRNA:   3'- aCGAGCGUCgUUAGCa--CuuCGCa-----GGG- -5'
31008 5' -53.6 NC_006560.1 + 82710 0.69 0.881179
Target:  5'- cUGCUgGUGGCGugccaCGUGAuuGGCGUgCCg -3'
miRNA:   3'- -ACGAgCGUCGUua---GCACU--UCGCAgGG- -5'
31008 5' -53.6 NC_006560.1 + 82068 0.67 0.9455
Target:  5'- aGUccgCGCGGCGGUCGgcguagGAcuuucGGCGaCCCa -3'
miRNA:   3'- aCGa--GCGUCGUUAGCa-----CU-----UCGCaGGG- -5'
31008 5' -53.6 NC_006560.1 + 81767 0.68 0.914093
Target:  5'- cUGCUCgGCcGUGAUCGUGccccccGGCGcCCCc -3'
miRNA:   3'- -ACGAG-CGuCGUUAGCACu-----UCGCaGGG- -5'
31008 5' -53.6 NC_006560.1 + 81051 0.68 0.907993
Target:  5'- cGCUCGCccAGCGggugGUCGUGGGuGUgGUCCa -3'
miRNA:   3'- aCGAGCG--UCGU----UAGCACUU-CG-CAGGg -5'
31008 5' -53.6 NC_006560.1 + 80918 0.69 0.881179
Target:  5'- cGCggggCGCAGcCAGUCGccGGGCGccUCCCc -3'
miRNA:   3'- aCGa---GCGUC-GUUAGCacUUCGC--AGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.