miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31012 5' -57.9 NC_006560.1 + 132086 0.66 0.80313
Target:  5'- cUCGCgCCGcgucguGCGCGUGUGCgGCGGGc- -3'
miRNA:   3'- uAGUG-GGU------CGCGCACGCGaUGCUCaa -5'
31012 5' -57.9 NC_006560.1 + 113646 0.66 0.80313
Target:  5'- -gCGCCCGGCuuccccGCG-GgGCUGCGGGa- -3'
miRNA:   3'- uaGUGGGUCG------CGCaCgCGAUGCUCaa -5'
31012 5' -57.9 NC_006560.1 + 87147 0.66 0.794074
Target:  5'- gAUCACCCcGCGC-UGCGCgggcccgGCGGcGUa -3'
miRNA:   3'- -UAGUGGGuCGCGcACGCGa------UGCU-CAa -5'
31012 5' -57.9 NC_006560.1 + 130701 0.66 0.784869
Target:  5'- -aCACCgggaCGGCGCGguucGCGC-GCGAGUa -3'
miRNA:   3'- uaGUGG----GUCGCGCa---CGCGaUGCUCAa -5'
31012 5' -57.9 NC_006560.1 + 39442 0.66 0.784869
Target:  5'- uUCA-CCAGCGCcacgGCGCUGCGcGGUc -3'
miRNA:   3'- uAGUgGGUCGCGca--CGCGAUGC-UCAa -5'
31012 5' -57.9 NC_006560.1 + 92891 0.66 0.76605
Target:  5'- -gCGCCCuggAGCGCG-GCGgCgGCGAGUg -3'
miRNA:   3'- uaGUGGG---UCGCGCaCGC-GaUGCUCAa -5'
31012 5' -57.9 NC_006560.1 + 4414 0.66 0.76605
Target:  5'- cGUCGCCCAGCuCGgGCGCccacACGGGc- -3'
miRNA:   3'- -UAGUGGGUCGcGCaCGCGa---UGCUCaa -5'
31012 5' -57.9 NC_006560.1 + 2056 0.67 0.727033
Target:  5'- --gGCCCAGCGCacgcgcgGCGCggcgGCGGGg- -3'
miRNA:   3'- uagUGGGUCGCGca-----CGCGa---UGCUCaa -5'
31012 5' -57.9 NC_006560.1 + 22842 0.68 0.696862
Target:  5'- -cCGCCCccggGGCGCGUGCuCUACGGc-- -3'
miRNA:   3'- uaGUGGG----UCGCGCACGcGAUGCUcaa -5'
31012 5' -57.9 NC_006560.1 + 85507 0.68 0.686683
Target:  5'- gGUCGCCgGGCugcugcccGCGgggGCGCUugGGGg- -3'
miRNA:   3'- -UAGUGGgUCG--------CGCa--CGCGAugCUCaa -5'
31012 5' -57.9 NC_006560.1 + 82785 0.68 0.676457
Target:  5'- -gCGCCCGcGCGCGgGCGC-GCGGGa- -3'
miRNA:   3'- uaGUGGGU-CGCGCaCGCGaUGCUCaa -5'
31012 5' -57.9 NC_006560.1 + 117833 0.68 0.666195
Target:  5'- -cCGCCCuGCGCGUGaGCUGgGGGc- -3'
miRNA:   3'- uaGUGGGuCGCGCACgCGAUgCUCaa -5'
31012 5' -57.9 NC_006560.1 + 72892 0.68 0.655904
Target:  5'- -cCACCCggaaGGCGCuGgacGCGCUGCGGGa- -3'
miRNA:   3'- uaGUGGG----UCGCG-Ca--CGCGAUGCUCaa -5'
31012 5' -57.9 NC_006560.1 + 26094 0.68 0.645594
Target:  5'- --gGCCCGGCGCGgcggGgGCUucGCGGGg- -3'
miRNA:   3'- uagUGGGUCGCGCa---CgCGA--UGCUCaa -5'
31012 5' -57.9 NC_006560.1 + 128790 0.69 0.604328
Target:  5'- cUCugCCGGCGCuucaagggGCGCUGCGAc-- -3'
miRNA:   3'- uAGugGGUCGCGca------CGCGAUGCUcaa -5'
31012 5' -57.9 NC_006560.1 + 55185 0.69 0.594045
Target:  5'- -aCGCCCGGCGCGgacccgGCGCcuccucuCGAGg- -3'
miRNA:   3'- uaGUGGGUCGCGCa-----CGCGau-----GCUCaa -5'
31012 5' -57.9 NC_006560.1 + 135977 0.69 0.594045
Target:  5'- cAUCACCCGGCGCGcggugGCgGCcggggGCGGGa- -3'
miRNA:   3'- -UAGUGGGUCGCGCa----CG-CGa----UGCUCaa -5'
31012 5' -57.9 NC_006560.1 + 71731 0.69 0.58379
Target:  5'- -gUACCCgucggGGCGCGgccUGCGCUGCGuGUUc -3'
miRNA:   3'- uaGUGGG-----UCGCGC---ACGCGAUGCuCAA- -5'
31012 5' -57.9 NC_006560.1 + 85248 0.69 0.58379
Target:  5'- -gCGCCCgcGGCGCGgaagccgGCGCUGCgGAGg- -3'
miRNA:   3'- uaGUGGG--UCGCGCa------CGCGAUG-CUCaa -5'
31012 5' -57.9 NC_006560.1 + 2412 0.7 0.573571
Target:  5'- uGUCggGCCCcaGGCGCGUGCGC-ACGcGGUa -3'
miRNA:   3'- -UAG--UGGG--UCGCGCACGCGaUGC-UCAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.