miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31013 5' -55 NC_006560.1 + 150349 0.67 0.907158
Target:  5'- gCGGGGCgguucggCGGCGGggGgGGUgcgUUUGGGGg -3'
miRNA:   3'- -GCCCCG-------GCUGUCuuUgUCA---GAGCUCC- -5'
31013 5' -55 NC_006560.1 + 149995 0.66 0.941833
Target:  5'- cCGGGGCCGcgcucgggaccGCGGGcggcgcaccccgaccGACGG-CgggCGAGGa -3'
miRNA:   3'- -GCCCCGGC-----------UGUCU---------------UUGUCaGa--GCUCC- -5'
31013 5' -55 NC_006560.1 + 149818 0.67 0.913723
Target:  5'- aGGGGg-GGCGGAGGCGGcCUCGcGGc -3'
miRNA:   3'- gCCCCggCUGUCUUUGUCaGAGCuCC- -5'
31013 5' -55 NC_006560.1 + 149215 0.7 0.819291
Target:  5'- gGGGGCgCGGCccGggGCGGaCcgUCGAGGg -3'
miRNA:   3'- gCCCCG-GCUGu-CuuUGUCaG--AGCUCC- -5'
31013 5' -55 NC_006560.1 + 149153 0.69 0.852035
Target:  5'- gCGGGGCgGccccCAGggGCGG-CgcgCGGGGa -3'
miRNA:   3'- -GCCCCGgCu---GUCuuUGUCaGa--GCUCC- -5'
31013 5' -55 NC_006560.1 + 147021 0.66 0.939985
Target:  5'- cCGGGGCC-ACGGGgggccccgaGACGG-C-CGGGGg -3'
miRNA:   3'- -GCCCCGGcUGUCU---------UUGUCaGaGCUCC- -5'
31013 5' -55 NC_006560.1 + 146365 0.68 0.901577
Target:  5'- gGGGGCCGAgGGAGgauccguguGCucUCUCGgcAGGg -3'
miRNA:   3'- gCCCCGGCUgUCUU---------UGucAGAGC--UCC- -5'
31013 5' -55 NC_006560.1 + 146047 0.72 0.677097
Target:  5'- gCGGGGacaCGcaccCGGggGCGGcCUCGGGGa -3'
miRNA:   3'- -GCCCCg--GCu---GUCuuUGUCaGAGCUCC- -5'
31013 5' -55 NC_006560.1 + 144365 0.71 0.755861
Target:  5'- gCGGGGCCGcggcgGCAGggGCGgcGUCcgCGGGc -3'
miRNA:   3'- -GCCCCGGC-----UGUCuuUGU--CAGa-GCUCc -5'
31013 5' -55 NC_006560.1 + 142365 0.74 0.575787
Target:  5'- gGGGGCCGGgGGcgGCGGcCUCcggGAGGg -3'
miRNA:   3'- gCCCCGGCUgUCuuUGUCaGAG---CUCC- -5'
31013 5' -55 NC_006560.1 + 140710 0.71 0.726884
Target:  5'- aGGGcCCGGgAGucGCcGUCUCGAGGg -3'
miRNA:   3'- gCCCcGGCUgUCuuUGuCAGAGCUCC- -5'
31013 5' -55 NC_006560.1 + 140522 0.67 0.922768
Target:  5'- gCGGGGCCGcuucaucgccgggcGCGGAGAgGGggCUccgaagcCGAGGu -3'
miRNA:   3'- -GCCCCGGC--------------UGUCUUUgUCa-GA-------GCUCC- -5'
31013 5' -55 NC_006560.1 + 139516 0.67 0.913723
Target:  5'- aCGGGGCUGcggcgauaGCgAGGGACGGggggCGGGGg -3'
miRNA:   3'- -GCCCCGGC--------UG-UCUUUGUCaga-GCUCC- -5'
31013 5' -55 NC_006560.1 + 139245 0.66 0.934713
Target:  5'- uCGGGGuCCGGCGcccGGAcccccgggggcgcGCGGUCgucggcgCGGGGg -3'
miRNA:   3'- -GCCCC-GGCUGU---CUU-------------UGUCAGa------GCUCC- -5'
31013 5' -55 NC_006560.1 + 137642 0.73 0.626394
Target:  5'- gCGGGGCUGGCGGA-GCuG-CUgGAGGa -3'
miRNA:   3'- -GCCCCGGCUGUCUuUGuCaGAgCUCC- -5'
31013 5' -55 NC_006560.1 + 135990 0.66 0.935204
Target:  5'- gCGGuGGCgGcCGGggGCGGgacCGAGGa -3'
miRNA:   3'- -GCC-CCGgCuGUCuuUGUCagaGCUCC- -5'
31013 5' -55 NC_006560.1 + 132968 0.76 0.478222
Target:  5'- gCGuGGGCC--CGGggGCAGuUCUCGAGGu -3'
miRNA:   3'- -GC-CCCGGcuGUCuuUGUC-AGAGCUCC- -5'
31013 5' -55 NC_006560.1 + 132724 0.69 0.82607
Target:  5'- uGGGGgCGGCGGGAAgAGggccgucaggaUCGGGGg -3'
miRNA:   3'- gCCCCgGCUGUCUUUgUCag---------AGCUCC- -5'
31013 5' -55 NC_006560.1 + 132246 0.68 0.881644
Target:  5'- gCGGGGCUGugGGGcgagGACGGcggcuucgcguaUCccuUCGAGGa -3'
miRNA:   3'- -GCCCCGGCugUCU----UUGUC------------AG---AGCUCC- -5'
31013 5' -55 NC_006560.1 + 131533 0.71 0.754909
Target:  5'- gCGGcGGCCGGCgacguGGAccuGGCGGUCUgcgggaaCGAGGg -3'
miRNA:   3'- -GCC-CCGGCUG-----UCU---UUGUCAGA-------GCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.