miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31014 5' -55.5 NC_006560.1 + 149907 0.66 0.923163
Target:  5'- cGCCgaAGGAacGGCGGcCGGGcgCGGcGUCg -3'
miRNA:   3'- -CGG--UCCUa-CUGCCuGCCCaaGCU-CAG- -5'
31014 5' -55.5 NC_006560.1 + 148773 0.66 0.91759
Target:  5'- cGCCAuguuGGAgggGGCGGGCGGGccggcccccCGAGg- -3'
miRNA:   3'- -CGGU----CCUa--CUGCCUGCCCaa-------GCUCag -5'
31014 5' -55.5 NC_006560.1 + 148142 0.72 0.663238
Target:  5'- cGCagGGGAgcggGGgGGACGGGUguaggUGAGUCg -3'
miRNA:   3'- -CGg-UCCUa---CUgCCUGCCCAa----GCUCAG- -5'
31014 5' -55.5 NC_006560.1 + 147384 0.67 0.911781
Target:  5'- uGCgGGGggGGCGGAgGGGagcgCGGG-Cg -3'
miRNA:   3'- -CGgUCCuaCUGCCUgCCCaa--GCUCaG- -5'
31014 5' -55.5 NC_006560.1 + 147310 0.7 0.752444
Target:  5'- cGCCGGGcgGAaGGugGGGUccgcugCGAGa- -3'
miRNA:   3'- -CGGUCCuaCUgCCugCCCAa-----GCUCag -5'
31014 5' -55.5 NC_006560.1 + 147046 0.75 0.465189
Target:  5'- gGCCGGGGggcGGCGGggggagGCGGGcggCGAGUCg -3'
miRNA:   3'- -CGGUCCUa--CUGCC------UGCCCaa-GCUCAG- -5'
31014 5' -55.5 NC_006560.1 + 146962 0.72 0.622564
Target:  5'- gGCCGGGGgccgGGCcuGGGCGGGUgggCGGGg- -3'
miRNA:   3'- -CGGUCCUa---CUG--CCUGCCCAa--GCUCag -5'
31014 5' -55.5 NC_006560.1 + 146603 0.67 0.905738
Target:  5'- gGCCGGGcgcuUG-CGGGCcuGGGUcUGGGUCu -3'
miRNA:   3'- -CGGUCCu---ACuGCCUG--CCCAaGCUCAG- -5'
31014 5' -55.5 NC_006560.1 + 146504 0.69 0.797865
Target:  5'- uGCCGGGggGAgcugcgcCGGGCGGGccggCGcGUCg -3'
miRNA:   3'- -CGGUCCuaCU-------GCCUGCCCaa--GCuCAG- -5'
31014 5' -55.5 NC_006560.1 + 140478 0.69 0.82483
Target:  5'- gGCCGGGggGGCGGAggaggUGGGggcggCGGGg- -3'
miRNA:   3'- -CGGUCCuaCUGCCU-----GCCCaa---GCUCag -5'
31014 5' -55.5 NC_006560.1 + 138426 0.7 0.733122
Target:  5'- gGCCGGGAUcgcGACGGugGuguGGggCGAGg- -3'
miRNA:   3'- -CGGUCCUA---CUGCCugC---CCaaGCUCag -5'
31014 5' -55.5 NC_006560.1 + 136805 0.67 0.899464
Target:  5'- aGCCAGGAcca-GGACGccggccgcgugcGGUUCGAGg- -3'
miRNA:   3'- -CGGUCCUacugCCUGC------------CCAAGCUCag -5'
31014 5' -55.5 NC_006560.1 + 135998 0.7 0.780618
Target:  5'- gGCCGGGGgcgggaccgagGACGGcCGGGg-CGAGUUc -3'
miRNA:   3'- -CGGUCCUa----------CUGCCuGCCCaaGCUCAG- -5'
31014 5' -55.5 NC_006560.1 + 134268 0.67 0.88623
Target:  5'- aGCCGGGca---GGGCGGGgUCGAccGUCg -3'
miRNA:   3'- -CGGUCCuacugCCUGCCCaAGCU--CAG- -5'
31014 5' -55.5 NC_006560.1 + 118389 0.7 0.780618
Target:  5'- cCCGGGG-GGCGGGCG-GUUCGGGcCc -3'
miRNA:   3'- cGGUCCUaCUGCCUGCcCAAGCUCaG- -5'
31014 5' -55.5 NC_006560.1 + 118136 0.68 0.857135
Target:  5'- cGCCGGGGgcgGACGcGGCGGaccgCGAGg- -3'
miRNA:   3'- -CGGUCCUa--CUGC-CUGCCcaa-GCUCag -5'
31014 5' -55.5 NC_006560.1 + 114999 1.11 0.002684
Target:  5'- cGCCAGGAUGACGGACGGGUUCGAGUCc -3'
miRNA:   3'- -CGGUCCUACUGCCUGCCCAAGCUCAG- -5'
31014 5' -55.5 NC_006560.1 + 113972 0.69 0.833185
Target:  5'- cGCCAcGA-GACGGGCGGGggCGuGa- -3'
miRNA:   3'- -CGGUcCUaCUGCCUGCCCaaGCuCag -5'
31014 5' -55.5 NC_006560.1 + 112989 0.68 0.864725
Target:  5'- uGCCGGG-UGaacGCGGGCGGGcaCGAccccGUCu -3'
miRNA:   3'- -CGGUCCuAC---UGCCUGCCCaaGCU----CAG- -5'
31014 5' -55.5 NC_006560.1 + 109438 0.67 0.879277
Target:  5'- cGUCGGGGUGGUGcGGCGGGaUUCGAaauaagGUCc -3'
miRNA:   3'- -CGGUCCUACUGC-CUGCCC-AAGCU------CAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.