miRNA display CGI


Results 21 - 40 of 561 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31015 3' -60.5 NC_006560.1 + 96077 0.79 0.149646
Target:  5'- gCCGugAUCGCCGCGgccggacgagcCGCCcCCGCgGCg -3'
miRNA:   3'- -GGCugUAGCGGCGC-----------GCGGuGGCGaCG- -5'
31015 3' -60.5 NC_006560.1 + 85430 0.79 0.153366
Target:  5'- -gGGCA-CGCCGUGCGCCACgGCgUGCc -3'
miRNA:   3'- ggCUGUaGCGGCGCGCGGUGgCG-ACG- -5'
31015 3' -60.5 NC_006560.1 + 24730 0.79 0.153366
Target:  5'- gCCGACgggcccGUCGUCGCGCGCCGCCacgucuacCUGCc -3'
miRNA:   3'- -GGCUG------UAGCGGCGCGCGGUGGc-------GACG- -5'
31015 3' -60.5 NC_006560.1 + 24116 0.79 0.16106
Target:  5'- gCGGCuggCGCCGCGCGCCGCCcggGCc -3'
miRNA:   3'- gGCUGua-GCGGCGCGCGGUGGcgaCG- -5'
31015 3' -60.5 NC_006560.1 + 96951 0.79 0.165035
Target:  5'- cUCGACGg-GCCGcCGCGCCGCCGC-GCc -3'
miRNA:   3'- -GGCUGUagCGGC-GCGCGGUGGCGaCG- -5'
31015 3' -60.5 NC_006560.1 + 143055 0.79 0.165035
Target:  5'- cCCGGC--CGCCGCGCGUCcCCGgUGCg -3'
miRNA:   3'- -GGCUGuaGCGGCGCGCGGuGGCgACG- -5'
31015 3' -60.5 NC_006560.1 + 35932 0.78 0.169099
Target:  5'- gCGGCcgcucUCGCCGCGCGCCAaCGCggGCg -3'
miRNA:   3'- gGCUGu----AGCGGCGCGCGGUgGCGa-CG- -5'
31015 3' -60.5 NC_006560.1 + 110466 0.78 0.169099
Target:  5'- gCCGACAgcuUCGCCGC-CGCCGCCaacuuCUGCc -3'
miRNA:   3'- -GGCUGU---AGCGGCGcGCGGUGGc----GACG- -5'
31015 3' -60.5 NC_006560.1 + 28727 0.78 0.169099
Target:  5'- gCCGGCGcCGCCGguugguCGCGCCACCGCgucccGCc -3'
miRNA:   3'- -GGCUGUaGCGGC------GCGCGGUGGCGa----CG- -5'
31015 3' -60.5 NC_006560.1 + 25050 0.78 0.173252
Target:  5'- gCCGAC-UCGcCCGCGCgcgaggcgGCCGCCGCcgGCg -3'
miRNA:   3'- -GGCUGuAGC-GGCGCG--------CGGUGGCGa-CG- -5'
31015 3' -60.5 NC_006560.1 + 22199 0.78 0.18626
Target:  5'- gCCGcCGUCGCCGCGgccCGCCcCCGCgGCc -3'
miRNA:   3'- -GGCuGUAGCGGCGC---GCGGuGGCGaCG- -5'
31015 3' -60.5 NC_006560.1 + 21980 0.78 0.18626
Target:  5'- gCCGACcaUGCCGCGCGCU-CCGCUcgGCg -3'
miRNA:   3'- -GGCUGuaGCGGCGCGCGGuGGCGA--CG- -5'
31015 3' -60.5 NC_006560.1 + 35255 0.78 0.18626
Target:  5'- aCCuGCGggGCCGCGCgGCCGCCGCgccggGCg -3'
miRNA:   3'- -GGcUGUagCGGCGCG-CGGUGGCGa----CG- -5'
31015 3' -60.5 NC_006560.1 + 22761 0.78 0.188058
Target:  5'- gCCGACGagGCCucgggcgccuucuacGCGCGCUACCGCgacgGCu -3'
miRNA:   3'- -GGCUGUagCGG---------------CGCGCGGUGGCGa---CG- -5'
31015 3' -60.5 NC_006560.1 + 23606 0.78 0.190784
Target:  5'- gCCG-CGguccCGCCGCGCGgCGCCGCcGCg -3'
miRNA:   3'- -GGCuGUa---GCGGCGCGCgGUGGCGaCG- -5'
31015 3' -60.5 NC_006560.1 + 74104 0.77 0.200122
Target:  5'- gCUGGCGUCGCUGgGCGaCGCCGCggGCc -3'
miRNA:   3'- -GGCUGUAGCGGCgCGCgGUGGCGa-CG- -5'
31015 3' -60.5 NC_006560.1 + 6098 0.77 0.204939
Target:  5'- gUCGAgGgCGCCGCGcCGCCGCCGCccucaccgcgccUGCg -3'
miRNA:   3'- -GGCUgUaGCGGCGC-GCGGUGGCG------------ACG- -5'
31015 3' -60.5 NC_006560.1 + 102559 0.77 0.209359
Target:  5'- aCGGCGUucuccagCGCCGCG-GCCGCCGCccgGCg -3'
miRNA:   3'- gGCUGUA-------GCGGCGCgCGGUGGCGa--CG- -5'
31015 3' -60.5 NC_006560.1 + 25887 0.77 0.209856
Target:  5'- gCCGGCGUgGgCCGCGCGCCuCCGaugggGCg -3'
miRNA:   3'- -GGCUGUAgC-GGCGCGCGGuGGCga---CG- -5'
31015 3' -60.5 NC_006560.1 + 22599 0.77 0.209856
Target:  5'- cCCGAC-UCGgacccggaccCCGCGcCGCCGCCGCcGCg -3'
miRNA:   3'- -GGCUGuAGC----------GGCGC-GCGGUGGCGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.