miRNA display CGI


Results 1 - 20 of 139 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31016 5' -64.3 NC_006560.1 + 150465 0.66 0.549672
Target:  5'- gGGCgGGGCCgGCcccGCCCCGcGGuccCGGCc -3'
miRNA:   3'- -CUG-CCCGGaCG---UGGGGC-CCua-GCCGa -5'
31016 5' -64.3 NC_006560.1 + 150407 0.66 0.52797
Target:  5'- gGGCGGGCCcuccccGCGCCCCGcgccccgcccccgcGGccgCGGCc -3'
miRNA:   3'- -CUGCCCGGa-----CGUGGGGC--------------CCua-GCCGa -5'
31016 5' -64.3 NC_006560.1 + 150014 0.66 0.530784
Target:  5'- cGCGGGCggcGCACCCCGaccGA-CGGCg -3'
miRNA:   3'- cUGCCCGga-CGUGGGGCc--CUaGCCGa -5'
31016 5' -64.3 NC_006560.1 + 149896 0.66 0.520496
Target:  5'- --aGGGCCccgcGCGCCgaaggaacggcggCCGGGcgCGGCg -3'
miRNA:   3'- cugCCCGGa---CGUGG-------------GGCCCuaGCCGa -5'
31016 5' -64.3 NC_006560.1 + 149152 0.66 0.512137
Target:  5'- cGCGGGgCgGC-CCCCaGGGG-CGGCg -3'
miRNA:   3'- cUGCCCgGaCGuGGGG-CCCUaGCCGa -5'
31016 5' -64.3 NC_006560.1 + 148791 0.68 0.423617
Target:  5'- gGGCGGGCCgGCcCCCCGaGGAga-GCa -3'
miRNA:   3'- -CUGCCCGGaCGuGGGGC-CCUagcCGa -5'
31016 5' -64.3 NC_006560.1 + 148452 0.66 0.549672
Target:  5'- gGGCGGGCCgacgGUcgUCUGGGG-CGGCg -3'
miRNA:   3'- -CUGCCCGGa---CGugGGGCCCUaGCCGa -5'
31016 5' -64.3 NC_006560.1 + 147933 0.68 0.415271
Target:  5'- --gGGGCCcGCGgcCCCCGGGAggCGGg- -3'
miRNA:   3'- cugCCCGGaCGU--GGGGCCCUa-GCCga -5'
31016 5' -64.3 NC_006560.1 + 147616 0.66 0.502915
Target:  5'- --gGGGCC-GCcuCCCCGGGGaggCGGUg -3'
miRNA:   3'- cugCCCGGaCGu-GGGGCCCUa--GCCGa -5'
31016 5' -64.3 NC_006560.1 + 146800 0.67 0.484694
Target:  5'- -cUGGGUCUGCGCcugggCCCGGGG-CGGg- -3'
miRNA:   3'- cuGCCCGGACGUG-----GGGCCCUaGCCga -5'
31016 5' -64.3 NC_006560.1 + 146523 0.71 0.265079
Target:  5'- gGGCGGGCCgGCGCgUCGGGGggcgCgGGCa -3'
miRNA:   3'- -CUGCCCGGaCGUGgGGCCCUa---G-CCGa -5'
31016 5' -64.3 NC_006560.1 + 146279 0.72 0.253329
Target:  5'- cGugGGGCCgGaCGCCgCGGGGgcgcggUCGGCg -3'
miRNA:   3'- -CugCCCGGaC-GUGGgGCCCU------AGCCGa -5'
31016 5' -64.3 NC_006560.1 + 146045 0.66 0.502915
Target:  5'- gGGCGGGgacacGCACCCgGGGG-CGGCc -3'
miRNA:   3'- -CUGCCCgga--CGUGGGgCCCUaGCCGa -5'
31016 5' -64.3 NC_006560.1 + 145835 0.71 0.277268
Target:  5'- cGGCGGGCCggggGCGCCCCcc--UCGGCc -3'
miRNA:   3'- -CUGCCCGGa---CGUGGGGcccuAGCCGa -5'
31016 5' -64.3 NC_006560.1 + 144393 0.67 0.440606
Target:  5'- cGCGGGCCggcggGCcCCCCGGGccUCcGCg -3'
miRNA:   3'- cUGCCCGGa----CGuGGGGCCCu-AGcCGa -5'
31016 5' -64.3 NC_006560.1 + 142742 0.69 0.365094
Target:  5'- cGGCGGaGCCcgGCGCCCgggccccgggggcgCGGGAgCGGCc -3'
miRNA:   3'- -CUGCC-CGGa-CGUGGG--------------GCCCUaGCCGa -5'
31016 5' -64.3 NC_006560.1 + 142510 0.7 0.323437
Target:  5'- -cCGGGCCccgGCGcCCCCGGGG-CGGg- -3'
miRNA:   3'- cuGCCCGGa--CGU-GGGGCCCUaGCCga -5'
31016 5' -64.3 NC_006560.1 + 142345 0.7 0.296382
Target:  5'- -cCGGGCCccgcgcGCGCCUCGGGGgccgggggCGGCg -3'
miRNA:   3'- cuGCCCGGa-----CGUGGGGCCCUa-------GCCGa -5'
31016 5' -64.3 NC_006560.1 + 141567 0.74 0.165992
Target:  5'- cGGCGGGCCcgGCucgACCCCGGcGG-CGGCg -3'
miRNA:   3'- -CUGCCCGGa-CG---UGGGGCC-CUaGCCGa -5'
31016 5' -64.3 NC_006560.1 + 140344 0.67 0.457975
Target:  5'- cGGCGGGaCaGC-CCCgCGGGcGUCGGCg -3'
miRNA:   3'- -CUGCCCgGaCGuGGG-GCCC-UAGCCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.