miRNA display CGI


Results 21 - 40 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31017 3' -55.7 NC_006560.1 + 129508 0.73 0.533179
Target:  5'- uCAUGCgcccccacuacgAGCGCUACCUGcagcugcuguucGAgGugGGGCa -3'
miRNA:   3'- -GUACG------------UCGCGAUGGAC------------CUgUugCCCG- -5'
31017 3' -55.7 NC_006560.1 + 100471 0.73 0.533179
Target:  5'- --aGCAgGCGCU-CCUcgcgGGACAGCGGGg -3'
miRNA:   3'- guaCGU-CGCGAuGGA----CCUGUUGCCCg -5'
31017 3' -55.7 NC_006560.1 + 91462 0.73 0.543192
Target:  5'- --cGCucauGCGCaACCUGGuCGAgGGGCg -3'
miRNA:   3'- guaCGu---CGCGaUGGACCuGUUgCCCG- -5'
31017 3' -55.7 NC_006560.1 + 94411 0.73 0.550237
Target:  5'- -cUGCGGCGCUACCUgccccacgccgccgGGuucucggagGCGgcGCGGGCg -3'
miRNA:   3'- guACGUCGCGAUGGA--------------CC---------UGU--UGCCCG- -5'
31017 3' -55.7 NC_006560.1 + 31587 0.73 0.562378
Target:  5'- -cUGCAaccuggcGCGCUGCCUGGcCGACGcGGa -3'
miRNA:   3'- guACGU-------CGCGAUGGACCuGUUGC-CCg -5'
31017 3' -55.7 NC_006560.1 + 81960 0.72 0.573571
Target:  5'- --cGCAGCGCaggggcgggUugCUGGGCAGguaGGGCc -3'
miRNA:   3'- guaCGUCGCG---------AugGACCUGUUg--CCCG- -5'
31017 3' -55.7 NC_006560.1 + 129436 0.72 0.573571
Target:  5'- --cGCAGCGuCUGCgCUGGgacucgGCGGCGGGg -3'
miRNA:   3'- guaCGUCGC-GAUG-GACC------UGUUGCCCg -5'
31017 3' -55.7 NC_006560.1 + 83191 0.72 0.573571
Target:  5'- --cGCGGgGCUGCCgGGGCuGCccgGGGCg -3'
miRNA:   3'- guaCGUCgCGAUGGaCCUGuUG---CCCG- -5'
31017 3' -55.7 NC_006560.1 + 118365 0.72 0.58379
Target:  5'- --gGCGGUGCUcgcggGCCUGGAgCccccggggGGCGGGCg -3'
miRNA:   3'- guaCGUCGCGA-----UGGACCU-G--------UUGCCCG- -5'
31017 3' -55.7 NC_006560.1 + 84413 0.72 0.594045
Target:  5'- --aGgGGCGCgGCCaGGGCcGCGGGCc -3'
miRNA:   3'- guaCgUCGCGaUGGaCCUGuUGCCCG- -5'
31017 3' -55.7 NC_006560.1 + 75135 0.72 0.604328
Target:  5'- --cGCGGcCGCcgACCUGGcgGCGGCGGuGCg -3'
miRNA:   3'- guaCGUC-GCGa-UGGACC--UGUUGCC-CG- -5'
31017 3' -55.7 NC_006560.1 + 78084 0.71 0.62495
Target:  5'- --cGCGGCGCUcggggGCCUcGACGGCccccGGGCg -3'
miRNA:   3'- guaCGUCGCGA-----UGGAcCUGUUG----CCCG- -5'
31017 3' -55.7 NC_006560.1 + 120115 0.71 0.645594
Target:  5'- gCGUGCuGCGCccuggGCCccgGGGCGugGuGGCa -3'
miRNA:   3'- -GUACGuCGCGa----UGGa--CCUGUugC-CCG- -5'
31017 3' -55.7 NC_006560.1 + 114105 0.71 0.645594
Target:  5'- --cGCAGaacuuCUACCUGGGCcGCGGGg -3'
miRNA:   3'- guaCGUCgc---GAUGGACCUGuUGCCCg -5'
31017 3' -55.7 NC_006560.1 + 99196 0.71 0.645594
Target:  5'- --gGCGGCGcCUGCCgcgacGGaagcgaccGCGGCGGGCu -3'
miRNA:   3'- guaCGUCGC-GAUGGa----CC--------UGUUGCCCG- -5'
31017 3' -55.7 NC_006560.1 + 114345 0.71 0.645594
Target:  5'- --gGgGGCGCgcgGCCggGGGCGcguacGCGGGCg -3'
miRNA:   3'- guaCgUCGCGa--UGGa-CCUGU-----UGCCCG- -5'
31017 3' -55.7 NC_006560.1 + 59987 0.71 0.654874
Target:  5'- --cGCuGCGCUGCCUGuGCAGCcuccuccGGGUg -3'
miRNA:   3'- guaCGuCGCGAUGGACcUGUUG-------CCCG- -5'
31017 3' -55.7 NC_006560.1 + 92381 0.71 0.655904
Target:  5'- --gGCGGCGCggcCCUGGAgGcCGGGg -3'
miRNA:   3'- guaCGUCGCGau-GGACCUgUuGCCCg -5'
31017 3' -55.7 NC_006560.1 + 73638 0.71 0.666195
Target:  5'- --cGCGGCGC--CCUGGACGcGCuGGCg -3'
miRNA:   3'- guaCGUCGCGauGGACCUGU-UGcCCG- -5'
31017 3' -55.7 NC_006560.1 + 10183 0.71 0.666195
Target:  5'- cCGUGCAcguGCGCcACCUcGGCGAUGGGg -3'
miRNA:   3'- -GUACGU---CGCGaUGGAcCUGUUGCCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.