miRNA display CGI


Results 1 - 20 of 206 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31017 3' -55.7 NC_006560.1 + 150018 0.73 0.51336
Target:  5'- --gGCGGCGC-ACCccgaccGACGGCGGGCg -3'
miRNA:   3'- guaCGUCGCGaUGGac----CUGUUGCCCG- -5'
31017 3' -55.7 NC_006560.1 + 149147 0.68 0.794074
Target:  5'- --cGCGGCGCggggcgGCCcccagGGGCGGCGcGCg -3'
miRNA:   3'- guaCGUCGCGa-----UGGa----CCUGUUGCcCG- -5'
31017 3' -55.7 NC_006560.1 + 147889 0.67 0.853869
Target:  5'- cCGUGCagacGGCGCagACCUcgcgGGGCGG-GGGCg -3'
miRNA:   3'- -GUACG----UCGCGa-UGGA----CCUGUUgCCCG- -5'
31017 3' -55.7 NC_006560.1 + 147277 0.66 0.903741
Target:  5'- --gGCGGcCGggGCC-GGGCGGgGGGCu -3'
miRNA:   3'- guaCGUC-GCgaUGGaCCUGUUgCCCG- -5'
31017 3' -55.7 NC_006560.1 + 147011 0.67 0.845881
Target:  5'- --cGCGGgGCcACCgGGGCcACGGGg -3'
miRNA:   3'- guaCGUCgCGaUGGaCCUGuUGCCCg -5'
31017 3' -55.7 NC_006560.1 + 146899 0.69 0.775525
Target:  5'- --gGcCAGgGCcGCCUGGGCc-CGGGCu -3'
miRNA:   3'- guaC-GUCgCGaUGGACCUGuuGCCCG- -5'
31017 3' -55.7 NC_006560.1 + 146864 0.69 0.746746
Target:  5'- --gGCGGCGCccggcccagcGCCUGGGCca-GGGCc -3'
miRNA:   3'- guaCGUCGCGa---------UGGACCUGuugCCCG- -5'
31017 3' -55.7 NC_006560.1 + 146272 0.69 0.76605
Target:  5'- --gGUAGCGCgugggGCC-GGACGccGCGGGg -3'
miRNA:   3'- guaCGUCGCGa----UGGaCCUGU--UGCCCg -5'
31017 3' -55.7 NC_006560.1 + 145775 0.66 0.884417
Target:  5'- --cGCGcGCGCUucucuCUgucucucuucuuccgGGGCGGCGGGCa -3'
miRNA:   3'- guaCGU-CGCGAu----GGa--------------CCUGUUGCCCG- -5'
31017 3' -55.7 NC_006560.1 + 144384 0.68 0.812029
Target:  5'- --gGCGGCGU--CCgcgGGcCGGCGGGCc -3'
miRNA:   3'- guaCGUCGCGauGGa--CCuGUUGCCCG- -5'
31017 3' -55.7 NC_006560.1 + 143327 0.69 0.76605
Target:  5'- --cGCGGCGac-CCcGaGGCGGCGGGCg -3'
miRNA:   3'- guaCGUCGCgauGGaC-CUGUUGCCCG- -5'
31017 3' -55.7 NC_006560.1 + 142211 0.66 0.909945
Target:  5'- --gGCGGCGCgccaccagaGCCauuaGGGCAuCGGGUg -3'
miRNA:   3'- guaCGUCGCGa--------UGGa---CCUGUuGCCCG- -5'
31017 3' -55.7 NC_006560.1 + 140630 0.68 0.820761
Target:  5'- --aGCuGaCGCaGCCggGGGgGACGGGCg -3'
miRNA:   3'- guaCGuC-GCGaUGGa-CCUgUUGCCCG- -5'
31017 3' -55.7 NC_006560.1 + 140248 0.68 0.82932
Target:  5'- --gGCGGCGgaACUcGGGCcaguccaacgagGGCGGGCg -3'
miRNA:   3'- guaCGUCGCgaUGGaCCUG------------UUGCCCG- -5'
31017 3' -55.7 NC_006560.1 + 139785 0.66 0.883716
Target:  5'- gAUGCGGCGa-GCCgacGGACGACGcuGCc -3'
miRNA:   3'- gUACGUCGCgaUGGa--CCUGUUGCc-CG- -5'
31017 3' -55.7 NC_006560.1 + 139522 0.7 0.727033
Target:  5'- -cUGCGGCGaUAgCgagGGACGGgGGGCg -3'
miRNA:   3'- guACGUCGCgAUgGa--CCUGUUgCCCG- -5'
31017 3' -55.7 NC_006560.1 + 138808 0.67 0.845881
Target:  5'- aCGUGCGGCGCcugg-GGACcACcgGGGCg -3'
miRNA:   3'- -GUACGUCGCGauggaCCUGuUG--CCCG- -5'
31017 3' -55.7 NC_006560.1 + 137197 0.66 0.915323
Target:  5'- --cGCGGCcccgccgGCgGCC-GGGgAGCGGGCg -3'
miRNA:   3'- guaCGUCG-------CGaUGGaCCUgUUGCCCG- -5'
31017 3' -55.7 NC_006560.1 + 136050 0.67 0.876582
Target:  5'- -cUGgAGCGCaccauggGCCUGGcCGA-GGGCa -3'
miRNA:   3'- guACgUCGCGa------UGGACCuGUUgCCCG- -5'
31017 3' -55.7 NC_006560.1 + 135999 0.66 0.890623
Target:  5'- gCcgGgGGCGggACCgaGGACGGCcgGGGCg -3'
miRNA:   3'- -GuaCgUCGCgaUGGa-CCUGUUG--CCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.