miRNA display CGI


Results 21 - 40 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31017 5' -65.9 NC_006560.1 + 48952 0.72 0.206415
Target:  5'- -aGCGCGgccaccgagGaGCCCgGGGCCGCGCUGa- -3'
miRNA:   3'- ugCGCGCa--------C-CGGG-CCCGGUGCGACca -5'
31017 5' -65.9 NC_006560.1 + 118980 0.72 0.206415
Target:  5'- -aGCGCGUGGCUCGGGgaggUCGCGC-GGc -3'
miRNA:   3'- ugCGCGCACCGGGCCC----GGUGCGaCCa -5'
31017 5' -65.9 NC_006560.1 + 15446 0.71 0.211269
Target:  5'- gGCGCGCGUucgcgccGCCCGGGCCAgGggcucguccucCUGGg -3'
miRNA:   3'- -UGCGCGCAc------CGGGCCCGGUgC-----------GACCa -5'
31017 5' -65.9 NC_006560.1 + 90839 0.71 0.220762
Target:  5'- cCGCGacggccaCGUGGuCCCGGGCCACGa-GGg -3'
miRNA:   3'- uGCGC-------GCACC-GGGCCCGGUGCgaCCa -5'
31017 5' -65.9 NC_006560.1 + 130459 0.71 0.221271
Target:  5'- cGCGCGCGUcGG-CCGGGacccccgcaCCGgGCUGGUg -3'
miRNA:   3'- -UGCGCGCA-CCgGGCCC---------GGUgCGACCA- -5'
31017 5' -65.9 NC_006560.1 + 115874 0.71 0.231675
Target:  5'- gGCGCcCGUGGCCCGGGUgugCACGUUcgacGGc -3'
miRNA:   3'- -UGCGcGCACCGGGCCCG---GUGCGA----CCa -5'
31017 5' -65.9 NC_006560.1 + 146633 0.71 0.237029
Target:  5'- cUGCGUcUGaGCCCGGGCCugGguCUGGg -3'
miRNA:   3'- uGCGCGcAC-CGGGCCCGGugC--GACCa -5'
31017 5' -65.9 NC_006560.1 + 25128 0.71 0.242487
Target:  5'- uGCGCGCGcuggGGCCUGGGUgCGcCGCUGcGg -3'
miRNA:   3'- -UGCGCGCa---CCGGGCCCG-GU-GCGAC-Ca -5'
31017 5' -65.9 NC_006560.1 + 83506 0.71 0.242487
Target:  5'- gGCGCGCGagggggcgGGCCgCGGGCgCGCGCccgcGGa -3'
miRNA:   3'- -UGCGCGCa-------CCGG-GCCCG-GUGCGa---CCa -5'
31017 5' -65.9 NC_006560.1 + 117464 0.7 0.253716
Target:  5'- gACGUGCGgcgcGaGCCCGGGCguccgggcuCGCUGGUc -3'
miRNA:   3'- -UGCGCGCa---C-CGGGCCCGgu-------GCGACCA- -5'
31017 5' -65.9 NC_006560.1 + 112507 0.7 0.253716
Target:  5'- gACGCGCGgGGCCUGGaGCUcaGCGUgGGg -3'
miRNA:   3'- -UGCGCGCaCCGGGCC-CGG--UGCGaCCa -5'
31017 5' -65.9 NC_006560.1 + 88486 0.7 0.253716
Target:  5'- -gGCGCGUGcGCCUGGGCCagaagGCGUcccGGUc -3'
miRNA:   3'- ugCGCGCAC-CGGGCCCGG-----UGCGa--CCA- -5'
31017 5' -65.9 NC_006560.1 + 130617 0.7 0.259489
Target:  5'- cCGCGCGgcUGGCgUGGGCC-CgGCUGGc -3'
miRNA:   3'- uGCGCGC--ACCGgGCCCGGuG-CGACCa -5'
31017 5' -65.9 NC_006560.1 + 75110 0.7 0.259489
Target:  5'- uCGCGCGgcucggGGCCCuggGGGCCGCGgccgccgacCUGGc -3'
miRNA:   3'- uGCGCGCa-----CCGGG---CCCGGUGC---------GACCa -5'
31017 5' -65.9 NC_006560.1 + 207 0.7 0.264185
Target:  5'- cGCGCGCGccgccgcgggagGGCCCGGcCCGCgGCUcGGUg -3'
miRNA:   3'- -UGCGCGCa-----------CCGGGCCcGGUG-CGA-CCA- -5'
31017 5' -65.9 NC_006560.1 + 1514 0.7 0.265369
Target:  5'- aGCGCGUGcaucgGGcCCCGGGCgCGCGCccGGc -3'
miRNA:   3'- -UGCGCGCa----CC-GGGCCCG-GUGCGa-CCa -5'
31017 5' -65.9 NC_006560.1 + 25841 0.7 0.271357
Target:  5'- gACG-GCGUGG-CCGGGCgCGCGCccgGGg -3'
miRNA:   3'- -UGCgCGCACCgGGCCCG-GUGCGa--CCa -5'
31017 5' -65.9 NC_006560.1 + 46986 0.7 0.277452
Target:  5'- cGCGCGCGUcuccuucgagGaGCCCgcGGGCCGCGCccgcGGg -3'
miRNA:   3'- -UGCGCGCA----------C-CGGG--CCCGGUGCGa---CCa -5'
31017 5' -65.9 NC_006560.1 + 15921 0.69 0.283656
Target:  5'- -aGgGCGUGGCCCguugggggGGaGCCGCcCUGGUa -3'
miRNA:   3'- ugCgCGCACCGGG--------CC-CGGUGcGACCA- -5'
31017 5' -65.9 NC_006560.1 + 57088 0.69 0.283656
Target:  5'- aGCGC-CGUcaGGCCCGcGGCCGCG-UGGc -3'
miRNA:   3'- -UGCGcGCA--CCGGGC-CCGGUGCgACCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.