miRNA display CGI


Results 21 - 40 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31018 3' -62.4 NC_006560.1 + 14622 0.76 0.20105
Target:  5'- cGgCCCUCGg-GCCCGcGGGCGGcacgGCCGCa -3'
miRNA:   3'- -CgGGGAGUagCGGGC-CCUGCC----UGGCG- -5'
31018 3' -62.4 NC_006560.1 + 142430 0.76 0.20105
Target:  5'- gGCCCCgc--CGCCCGGcGCGGcgGCCGCg -3'
miRNA:   3'- -CGGGGaguaGCGGGCCcUGCC--UGGCG- -5'
31018 3' -62.4 NC_006560.1 + 84356 0.75 0.205811
Target:  5'- cGCgCCUCccggcUCGCCCGGGACc-GCCGCg -3'
miRNA:   3'- -CGgGGAGu----AGCGGGCCCUGccUGGCG- -5'
31018 3' -62.4 NC_006560.1 + 34260 0.75 0.215625
Target:  5'- cGCCCCUCG-C-CCCGGG-CGuACCGCg -3'
miRNA:   3'- -CGGGGAGUaGcGGGCCCuGCcUGGCG- -5'
31018 3' -62.4 NC_006560.1 + 48721 0.75 0.230566
Target:  5'- cCUCUUCcUCGCCCGGGAgguucucUGGGCCGUc -3'
miRNA:   3'- cGGGGAGuAGCGGGCCCU-------GCCUGGCG- -5'
31018 3' -62.4 NC_006560.1 + 34983 0.75 0.231097
Target:  5'- gGCCCCcCGggCGCCuCGGGgccGCGGGCCGg -3'
miRNA:   3'- -CGGGGaGUa-GCGG-GCCC---UGCCUGGCg -5'
31018 3' -62.4 NC_006560.1 + 53578 0.75 0.231097
Target:  5'- cGCgCCCgggcgCAgcgCGCCCGGGACGccGGCCGg -3'
miRNA:   3'- -CG-GGGa----GUa--GCGGGCCCUGC--CUGGCg -5'
31018 3' -62.4 NC_006560.1 + 107453 0.75 0.236458
Target:  5'- uGCCCCUCgcgaccGUCgGCCCgGGGGCGcucGCCGCc -3'
miRNA:   3'- -CGGGGAG------UAG-CGGG-CCCUGCc--UGGCG- -5'
31018 3' -62.4 NC_006560.1 + 89250 0.74 0.239725
Target:  5'- cGCCCCggcccgagccCGCCCuuuGGGGCGGGCCGg -3'
miRNA:   3'- -CGGGGagua------GCGGG---CCCUGCCUGGCg -5'
31018 3' -62.4 NC_006560.1 + 70199 0.74 0.241923
Target:  5'- cGCCgaCCUCGUCGCCCGGG-CcGACCc- -3'
miRNA:   3'- -CGG--GGAGUAGCGGGCCCuGcCUGGcg -5'
31018 3' -62.4 NC_006560.1 + 137154 0.74 0.241923
Target:  5'- aGCUCCUgG-CGCUCGGGGCGGAgggCGCg -3'
miRNA:   3'- -CGGGGAgUaGCGGGCCCUGCCUg--GCG- -5'
31018 3' -62.4 NC_006560.1 + 108617 0.74 0.247493
Target:  5'- cGCCCgCgag-CGaCCCGGcGAUGGGCCGCg -3'
miRNA:   3'- -CGGG-GaguaGC-GGGCC-CUGCCUGGCG- -5'
31018 3' -62.4 NC_006560.1 + 66935 0.74 0.253169
Target:  5'- gGCCCC-CG-C-CCCGGGGCGGGCCu- -3'
miRNA:   3'- -CGGGGaGUaGcGGGCCCUGCCUGGcg -5'
31018 3' -62.4 NC_006560.1 + 124110 0.74 0.257206
Target:  5'- uGCCCCUC-UCGCCgCGGGgcacccacggcgucGCGGcGCCGg -3'
miRNA:   3'- -CGGGGAGuAGCGG-GCCC--------------UGCC-UGGCg -5'
31018 3' -62.4 NC_006560.1 + 4625 0.74 0.258952
Target:  5'- gGCCUCgUCggCGUCCaGGGgcACGGGCCGCg -3'
miRNA:   3'- -CGGGG-AGuaGCGGG-CCC--UGCCUGGCG- -5'
31018 3' -62.4 NC_006560.1 + 47720 0.74 0.258952
Target:  5'- cGCCCCUCccCGCuUCGGGGCcccGGcCCGCg -3'
miRNA:   3'- -CGGGGAGuaGCG-GGCCCUG---CCuGGCG- -5'
31018 3' -62.4 NC_006560.1 + 992 0.74 0.258952
Target:  5'- cGCCCCUCGcccCGgCCGGGGCGccgucuCCGCc -3'
miRNA:   3'- -CGGGGAGUa--GCgGGCCCUGCcu----GGCG- -5'
31018 3' -62.4 NC_006560.1 + 130443 0.74 0.267228
Target:  5'- cGCCCCUCuucguccccgcgcgcGUCGgCCGGGACcc-CCGCa -3'
miRNA:   3'- -CGGGGAG---------------UAGCgGGCCCUGccuGGCG- -5'
31018 3' -62.4 NC_006560.1 + 5330 0.74 0.270235
Target:  5'- gGCCCCUCcggGUCCGGcguccucGGCGGGCCGUc -3'
miRNA:   3'- -CGGGGAGuagCGGGCC-------CUGCCUGGCG- -5'
31018 3' -62.4 NC_006560.1 + 57325 0.74 0.270839
Target:  5'- aCCUCUCGgcggUGCgCGGGGCaGGCCGCg -3'
miRNA:   3'- cGGGGAGUa---GCGgGCCCUGcCUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.