miRNA display CGI


Results 1 - 20 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31019 5' -64.9 NC_006560.1 + 143485 0.66 0.541203
Target:  5'- -gGCGGgCGCcCGGCguccCCCGCccccGUCCc -3'
miRNA:   3'- agCGCCgGCGaGCCGa---GGGCG----CAGGu -5'
31019 5' -64.9 NC_006560.1 + 37523 0.66 0.541203
Target:  5'- gCGCGccGCgGCUCGGC-CgCGCGggcggCCAu -3'
miRNA:   3'- aGCGC--CGgCGAGCCGaGgGCGCa----GGU- -5'
31019 5' -64.9 NC_006560.1 + 61624 0.66 0.541203
Target:  5'- -gGCGGCCag--GGC-CgCCGCGUCCAg -3'
miRNA:   3'- agCGCCGGcgagCCGaG-GGCGCAGGU- -5'
31019 5' -64.9 NC_006560.1 + 74435 0.66 0.541203
Target:  5'- gCGCGGgaCCGcCUCGGCgcgcgCgCGCGcgCCAu -3'
miRNA:   3'- aGCGCC--GGC-GAGCCGa----GgGCGCa-GGU- -5'
31019 5' -64.9 NC_006560.1 + 79474 0.66 0.541203
Target:  5'- -gGCGGCgCGUgagccccccgCGGCgCCCGCG-CCg -3'
miRNA:   3'- agCGCCG-GCGa---------GCCGaGGGCGCaGGu -5'
31019 5' -64.9 NC_006560.1 + 3468 0.66 0.541203
Target:  5'- cUUGCgGGCCGCgcgggCGGCgUCgGCGUCg- -3'
miRNA:   3'- -AGCG-CCGGCGa----GCCGaGGgCGCAGgu -5'
31019 5' -64.9 NC_006560.1 + 142476 0.66 0.540269
Target:  5'- -gGCGGCCGC-CGGCguuuugcuuucggUUCgGCGcCCGg -3'
miRNA:   3'- agCGCCGGCGaGCCG-------------AGGgCGCaGGU- -5'
31019 5' -64.9 NC_006560.1 + 134793 0.66 0.540269
Target:  5'- -gGCGGCgCGCUccaCGGC-CCCGCccacggucgccagGUCCc -3'
miRNA:   3'- agCGCCG-GCGA---GCCGaGGGCG-------------CAGGu -5'
31019 5' -64.9 NC_006560.1 + 92377 0.66 0.539334
Target:  5'- gCGCGGCgGCgCGGCccuggaggccggggCCCGCGcgcucguggacgcggUCCAc -3'
miRNA:   3'- aGCGCCGgCGaGCCGa-------------GGGCGC---------------AGGU- -5'
31019 5' -64.9 NC_006560.1 + 129927 0.66 0.531881
Target:  5'- gCGCGGCCggaggcgcgcaGCcCGGC-CCCGaccuCGUCCu -3'
miRNA:   3'- aGCGCCGG-----------CGaGCCGaGGGC----GCAGGu -5'
31019 5' -64.9 NC_006560.1 + 117728 0.66 0.531881
Target:  5'- cCGgGGCgGCcCGGCcuccUCCCGCGcgagcCCAg -3'
miRNA:   3'- aGCgCCGgCGaGCCG----AGGGCGCa----GGU- -5'
31019 5' -64.9 NC_006560.1 + 123076 0.66 0.531881
Target:  5'- aUCcCGGCC-CUCGGCgCCCGCuucGUCgAg -3'
miRNA:   3'- -AGcGCCGGcGAGCCGaGGGCG---CAGgU- -5'
31019 5' -64.9 NC_006560.1 + 110694 0.66 0.531881
Target:  5'- cCGcCGaGCCGC-CGGCcgucUCCCGCGacgcgcgCCAu -3'
miRNA:   3'- aGC-GC-CGGCGaGCCG----AGGGCGCa------GGU- -5'
31019 5' -64.9 NC_006560.1 + 111501 0.66 0.529096
Target:  5'- cCGUGGCCGUccccCGGCUcacgcacgccgacaCCCGCGggcggCCc -3'
miRNA:   3'- aGCGCCGGCGa---GCCGA--------------GGGCGCa----GGu -5'
31019 5' -64.9 NC_006560.1 + 43129 0.66 0.526316
Target:  5'- gUCGCGGCCGCggGGUcggggucgcgagucgUCaCgGCGUCgAg -3'
miRNA:   3'- -AGCGCCGGCGagCCG---------------AG-GgCGCAGgU- -5'
31019 5' -64.9 NC_006560.1 + 25466 0.66 0.526316
Target:  5'- -gGCGGCCGCcgaggacugguagcCGGCgccgccgCCCGCGaCCc -3'
miRNA:   3'- agCGCCGGCGa-------------GCCGa------GGGCGCaGGu -5'
31019 5' -64.9 NC_006560.1 + 138971 0.66 0.522618
Target:  5'- gCGCaGCUGgUCGcGCaCCCGCGUCg- -3'
miRNA:   3'- aGCGcCGGCgAGC-CGaGGGCGCAGgu -5'
31019 5' -64.9 NC_006560.1 + 142565 0.66 0.522618
Target:  5'- aCGCgGGCCGC-CGGCcucUCCCgaGCGgaccCCGg -3'
miRNA:   3'- aGCG-CCGGCGaGCCG---AGGG--CGCa---GGU- -5'
31019 5' -64.9 NC_006560.1 + 149883 0.66 0.522618
Target:  5'- cCcCGGCCGCggaagGGC-CCCGCGcgCCGa -3'
miRNA:   3'- aGcGCCGGCGag---CCGaGGGCGCa-GGU- -5'
31019 5' -64.9 NC_006560.1 + 134209 0.66 0.522618
Target:  5'- gCGCGGgcCCGCggggUCGGC-CCCGCccgCCGc -3'
miRNA:   3'- aGCGCC--GGCG----AGCCGaGGGCGca-GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.