miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31021 5' -56.4 NC_006560.1 + 136157 0.65 0.891992
Target:  5'- gGCGGGGCUCcugggucgccaccuGCUGacgGC-CGUGGUg- -3'
miRNA:   3'- aCGCCUCGAG--------------CGACg--CGuGCAUCAac -5'
31021 5' -56.4 NC_006560.1 + 18308 0.66 0.889962
Target:  5'- gGCGGAGCcccuggggacgcccgUCGUcgUGCGCGCGg----- -3'
miRNA:   3'- aCGCCUCG---------------AGCG--ACGCGUGCaucaac -5'
31021 5' -56.4 NC_006560.1 + 146294 0.66 0.887224
Target:  5'- cGCGGGGg-CGCggucgGCGUccACGUGGUg- -3'
miRNA:   3'- aCGCCUCgaGCGa----CGCG--UGCAUCAac -5'
31021 5' -56.4 NC_006560.1 + 34636 0.66 0.887224
Target:  5'- cGCGGAGgUCGCaccgggGaCGCGCGgcGg-- -3'
miRNA:   3'- aCGCCUCgAGCGa-----C-GCGUGCauCaac -5'
31021 5' -56.4 NC_006560.1 + 81965 0.66 0.880219
Target:  5'- cGCaGGGGCgggUUGCUGgGCAgGUAGg-- -3'
miRNA:   3'- aCG-CCUCG---AGCGACgCGUgCAUCaac -5'
31021 5' -56.4 NC_006560.1 + 124122 0.66 0.880219
Target:  5'- cGCGGGGCacccacggcgUCGCgGCGC-CGgcGggGg -3'
miRNA:   3'- aCGCCUCG----------AGCGaCGCGuGCauCaaC- -5'
31021 5' -56.4 NC_006560.1 + 73424 0.66 0.87299
Target:  5'- cGCGGAGCUggagcgccaGCUGCGgGCGa----- -3'
miRNA:   3'- aCGCCUCGAg--------CGACGCgUGCaucaac -5'
31021 5' -56.4 NC_006560.1 + 52326 0.66 0.87299
Target:  5'- --aGGGGCUCGUcgGCGCGgcCGUGGg-- -3'
miRNA:   3'- acgCCUCGAGCGa-CGCGU--GCAUCaac -5'
31021 5' -56.4 NC_006560.1 + 128260 0.66 0.865542
Target:  5'- cUGCaGGAGg-CGCUGCGCGCcgAGggGg -3'
miRNA:   3'- -ACG-CCUCgaGCGACGCGUGcaUCaaC- -5'
31021 5' -56.4 NC_006560.1 + 101810 0.66 0.857882
Target:  5'- gGCGGAGCagCGCcGCGacCACGgcGUg- -3'
miRNA:   3'- aCGCCUCGa-GCGaCGC--GUGCauCAac -5'
31021 5' -56.4 NC_006560.1 + 3674 0.66 0.857882
Target:  5'- cGCGGAGgUCGCcGCGCAgGc----- -3'
miRNA:   3'- aCGCCUCgAGCGaCGCGUgCaucaac -5'
31021 5' -56.4 NC_006560.1 + 112817 0.66 0.857882
Target:  5'- cGUGGAggcGCUCGC-GCaGCugGUGGgcGa -3'
miRNA:   3'- aCGCCU---CGAGCGaCG-CGugCAUCaaC- -5'
31021 5' -56.4 NC_006560.1 + 62856 0.66 0.857882
Target:  5'- -cCGGAGCUccCGCaGCaGCGCGU-GUUGg -3'
miRNA:   3'- acGCCUCGA--GCGaCG-CGUGCAuCAAC- -5'
31021 5' -56.4 NC_006560.1 + 130811 0.67 0.846811
Target:  5'- cGCGGGGCcaCGCgcaggccgugacgGCGCGCGUccuGGUg- -3'
miRNA:   3'- aCGCCUCGa-GCGa------------CGCGUGCA---UCAac -5'
31021 5' -56.4 NC_006560.1 + 39613 0.67 0.841947
Target:  5'- cGCGGAGCgcCGCgGCGgGCGUcGg-- -3'
miRNA:   3'- aCGCCUCGa-GCGaCGCgUGCAuCaac -5'
31021 5' -56.4 NC_006560.1 + 140520 0.67 0.84113
Target:  5'- cUGCGGGGCcgcuucaUCGCcGgGCGCGgagAGggGg -3'
miRNA:   3'- -ACGCCUCG-------AGCGaCgCGUGCa--UCaaC- -5'
31021 5' -56.4 NC_006560.1 + 94454 0.67 0.833687
Target:  5'- cGCGGGcGCgcgCGCUGCGCGUGcUGGa-- -3'
miRNA:   3'- aCGCCU-CGa--GCGACGCGUGC-AUCaac -5'
31021 5' -56.4 NC_006560.1 + 129871 0.67 0.833687
Target:  5'- cGCGGAggcgcGCUUccgGCUGCGCgcgcccGCGUGGggGc -3'
miRNA:   3'- aCGCCU-----CGAG---CGACGCG------UGCAUCaaC- -5'
31021 5' -56.4 NC_006560.1 + 55333 0.67 0.825241
Target:  5'- gGCgGGGGCUCGUgGCGgC-CGUGGUg- -3'
miRNA:   3'- aCG-CCUCGAGCGaCGC-GuGCAUCAac -5'
31021 5' -56.4 NC_006560.1 + 4586 0.68 0.798868
Target:  5'- gGCGuAGCcgUCGCgguaGCGCGCGUAGa-- -3'
miRNA:   3'- aCGCcUCG--AGCGa---CGCGUGCAUCaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.